DreINT0022880 @ danRer10
Intron Retention
Gene
ENSDARG00000056781 | ZAN
Description
zonadhesin (gene/pseudogene) [Source:HGNC Symbol;Acc:HGNC:12857]
Coordinates
chr7:26075548-26075915:+
Coord C1 exon
chr7:26075548-26075725
Coord A exon
chr7:26075726-26075806
Coord C2 exon
chr7:26075807-26075915
Length
81 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAAG
5' ss Score
3.86
3' ss Seq
TCCTACTTACTGTATTAAAGGAA
3' ss Score
5.89
Exon sequences
Seq C1 exon
GTGAATGGAGTTCAGGTCACTGCGCCTGTAACACTTTCTAATGGTATTAAGATCTTCATGAGTGGCAAATTTGTGGTGCTTGAGACCAACTTTGGACTGCGTGTCCGCTTTGATGGAAATCATCATGCAGATGTCACCCTGCCTTCCTCTTACAACGGACTGTTATGTGGACTTTGTG
Seq A exon
GTAAAGATAGCACACTAAATTATCATGTAGCAACTTAATCTTAATAGTTTGGTGTGTTAAATCCTACTTACTGTATTAAAG
Seq C2 exon
GAAACTTTAATGGTAATCCTAATGACGACAACATCAAGTTAGATGGGAAGCCCACAGACAGCACCAATGAGCTTGGAGAGAGTTGGCAGGTGCCTGATGACAGACCAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000056781:ENSDART00000159818:28
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.730
Domain overlap (PFAM):
C1:
PF0009420=VWD=FE(38.1=100)
A:
NA
C2:
PF0009420=VWD=PD(10.3=43.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGGTGCTTGAGACCAACTT
R:
AGCTCATTGGTGCTGTCTGTG
Band lengths:
180-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]