BtaINT0163465 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003432 | ZAN
Description
zonadhesin (gene/pseudogene) [Source:HGNC Symbol;Acc:HGNC:12857]
Coordinates
chr25:36381321-36381858:-
Coord C1 exon
chr25:36381678-36381858
Coord A exon
chr25:36381433-36381677
Coord C2 exon
chr25:36381321-36381432
Length
245 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
3' ss Seq
CTGACTGCTTGGTCCCCCAGGGA
3' ss Score
8.77
Exon sequences
Seq C1 exon
CTGGATGGTCGCCAGGTGGCTCTGCCCCTGTGGTTTGCCCACGGCCGGATGACCGTGAGGTCCAGTGGCTCCTTTATCCTCCTCTACACGGACTTCGGGCTTCAAGTTCGCTACGACGGGTACCACCTGGTGGAAGTGACTGCTCCCTCCTCCTACGCCGGCCGGCTCTGTGGGATGTGTG
Seq A exon
GTGAGTTCCCTGGGCACGTGCAGGCGAAGCGGGGGCCACGGGCAACCCGAGCCTCTCAGGGATCTTGCTCATCCACACGTGAACAAGTGCTTGGCGATCTGTTACTCGGTTGAGGGCATTGTGTGTGAGGGTATGTGTGAAGGGAAGCCAAAGATGAAGGAAGAGAAAAGGCTTCTCTTGGAGAGAGGGTGGCTTCTTGGTCCTGGGACCGAGCCTGTGGCCTCTCTGACTGCTTGGTCCCCCAG
Seq C2 exon
GGAACTACAACAACAACAGCCTGGACGACAATCTGCAGCCTGATAAGAGACCTGCTGTCAACTCCGTGCGCTTGGGGGCCTCCTGGAAGCTAAATGAGTTATCTGAATCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003432:ENSBTAT00000044014:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.079
Domain overlap (PFAM):
C1:
PF0009420=VWD=FE(38.5=100)
A:
NA
C2:
PF0009420=VWD=PD(10.3=42.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGATGGTCGCCAGGTGG
R:
CCAGATTCAGATAACTCATTTAGCTT
Band lengths:
292-537
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]