RnoINT0004107 @ rn6
Intron Retention
Gene
ENSRNOG00000061063 | AABR07035779.2
Description
NA
Coordinates
chr12:22321967-22322960:+
Coord C1 exon
chr12:22321967-22322140
Coord A exon
chr12:22322141-22322657
Coord C2 exon
chr12:22322658-22322960
Length
517 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGC
5' ss Score
8.15
3' ss Seq
AGCTCCCATGCCGCCCTTAGGGA
3' ss Score
6.56
Exon sequences
Seq C1 exon
ACCAAAGGGTGGTGCTACCTGTGTGGCCTTCGAAAGGACGGGTGACCATTAGGATGAGTGGCATCTTTGTCCTGCTCTACACAAACTTTGGCCTTCAAGTTCGATATGACGGAAGGCATCTGGTGGAGGTGACGGTGCCGTCCTCGTACACTGGCTCACTCTGTGGGCTGTGTG
Seq A exon
GTAAGCACCCTGTGGGAAAGCAGTGTCCCCCCCATGTCTCTATTAGGTGTCCTCAGGGCTTGTCAACTGAGGTGATGAGAAAAGGGGTTGCCAAAAGTGATGGTGCCGGAAATCACGGTACTTGGGAGGTAGAGGCAGGAGGATCAGGAGTTCAAGGTCATTCTCTGTTATGTAGAAAGCTCAAGGGCAACCTGGACTGCATAAAAACCTGCTCCAAAAAAAACCCAACAAAGGTGAAAGATGTTACCTAGGGAGTCTTGGGTTTTGTCCCCAGCACTGCATAAACTGGTTGTGGCAGGACTTGCCTATAGTACCAGGACTTGGGAGGGGACAATAAAAGGATGAAAAGTCCAAGGCCATCCTTGGCTACATAGTTCAAGGCTAGACTGGTGTGTGCAAGACCTTGTCATTAAACAGGGAACAGTACAAAACAAAACGGAAAAATGAAACAGCCAAAGGGTCAGCCTTGACGTGGCCTCAGAGCCGAGTGGAGTCAAAGCTCCCATGCCGCCCTTAG
Seq C2 exon
GGAACTACAACAATAACAGCTTGGATGATAATCTGCGTGCAGACATGAAGCCGGCGGTCAACTCACTTCTGCTGGGAGCTGCTTGGAAAATCCTTGAAGCCTCTGATCCTGGGTGAGTTGGGTATAGGATCTTGGCCTAGGTGAGCTGAGCCTGGGTGAGCTGCACTTGGGTGAGCTAGGCCTGGTGAGGGCCGAGCCTTAGGGAACTAGGCCTAGGGGGAATGGACAGACAGAGATGGACATGGTGCGGTCTGAGCACGGGGGAGTTGGGCATCTGATAAGTTAGGTCTAGGGAAACTGGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000061063:ENSRNOT00000080849:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGTGGCATCTTTGTCCTGC
R:
CTCTGTCTGTCCATTCCCCCT
Band lengths:
355-872
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]