HsaINT0184448 @ hg19
Intron Retention
Gene
ENSG00000146839 | ZAN
Description
zonadhesin [Source:HGNC Symbol;Acc:12857]
Coordinates
chr7:100365454-100366344:+
Coord C1 exon
chr7:100365454-100365634
Coord A exon
chr7:100365635-100366232
Coord C2 exon
chr7:100366233-100366344
Length
598 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
3' ss Seq
TTAATGACTCCCTCCTCTAGGGA
3' ss Score
9.92
Exon sequences
Seq C1 exon
CTGAATGGCCATCGGGTGGCCCTACCTGTGTGGCTTGCACAAGGCCGGGTGACCATAAGGCTCAGCAGCAACCTCGTCCTCCTCTACACGAACTTTGGGCTCCAAGTTCGCTACGACGGGAGCCACTTGGTGGAAGTGACAGTCCCCTCCTCCTATGGCGGCCAGCTCTGTGGGCTGTGTG
Seq A exon
GTGAGTTTCCTGGGCACCTGCGGGGAAAGCTGGGACAATGAGTAGGCGTGTGACCTGGTCCCAGCTCCCCCAACATCTCTGTGAGGTGTTCTAAGTACTTGTCAACTGACTAATTCGTTGAGGACATTAGGCATGAAGGTAGGAGTTAAGGGAAGACGGAGATGAAGAGACAGAAAGGGGCCAGGCGCGGTGGCTCATACCTGTAAATGCAACACTTTGAGAGCCCGAGGAGGGTGGATCACTTGAGGTCAAGGGTTCGAGACCAGCCTGGCCAACATGGCAAAAACCTGTCTCTACTAAAAATACAAAAATTAGCCAGGCATGGTGGTGCATGCCTTTAATCCCAGCTATTTGGGAGGCTGACGCGGGAGAATCGCTTGAACCTGGGAGGTGGACGTTGCAGTGAGCTGAGATCGCGCCACTGCACTCCAGCCTGGGTGTCAGAGCAAGACTCCATCTCAAAAAAGAAGAAAAAGAGACAGAAAGGGTTAACCTTGCTATGTAGAATGAAAAGTGAGGGTGCCAGGAGGATGGTGGCCCTGGGGCCTGGCCTGCTGGGGGGCCCCTTCTTGCCTGTTTTAATGACTCCCTCCTCTAG
Seq C2 exon
GGAACTACAACAACAACAGCTTGGATGACAACCTGCGCCCCGACAGAAAGCTTGCAGGCGATTCCATGCAGCTGGGGGCCGCCTGGAAGTTACCTGAATCCTCTGAACCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000146839-ZAN:NM_003386:26
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.053
Domain overlap (PFAM):
C1:
PF0009420=VWD=FE(38.5=100)
A:
NA
C2:
PF0009420=VWD=PD(10.3=42.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAATGGCCATCGGGTG
R:
CCAGGTTCAGAGGATTCAGGT
Band lengths:
293-891
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)