DreINT0022894 @ danRer10
Intron Retention
Gene
ENSDARG00000056781 | ZAN
Description
zonadhesin (gene/pseudogene) [Source:HGNC Symbol;Acc:HGNC:12857]
Coordinates
chr7:26085171-26086013:+
Coord C1 exon
chr7:26085171-26085315
Coord A exon
chr7:26085316-26085765
Coord C2 exon
chr7:26085766-26086013
Length
450 bp
Sequences
Splice sites
5' ss Seq
AGAGTGAGT
5' ss Score
7.36
3' ss Seq
CCTTCTCTTACTTCTTACAGAAT
3' ss Score
9.75
Exon sequences
Seq C1 exon
GTGGGGGATTCCTGGATAACAGACCGCTGCACACAGAAATGCACCTGCAGCCTTGGAGGACTGTTGACCTGCAATGCCTTTGAATGCAATGAAAACTCAATCTGTGATCTTGACAGCAATGGAGACCGTTACTGCAAACCCGAGA
Seq A exon
GTGAGTTTAAGAATTAAATGACTTAAAAATGTATTTACCTCAGACCATCAAATCAATCAAAACTATGTATTTACCATACACAAATAAGAAAAAATGAAGATTTTAATTATTGTATATCTGTATATGCATGTGTTAATTGTACAAGCTAAAACTATATAGACTATTGTAAACAATAACAATGGTCCTAATTTATTTCCTGTTGTACATTTTCAATTTCTATAGCTTCCAAAAATGCAAAAAGGTCCACATATTGATAAATAATGTTATGATAGCTGTTTTAACATGAAGTTATGACTGAATTGCCTCGTGTTACAGTTATGAAATAGTTTGATAACAAGCAGAAAATGTTAATGGGCCAATAACACGACCACATTGAAATGGTCTATATTTGATTTATATATCTGTATATACACAGAACTAACTAACGTAACCTTCTCTTACTTCTTACAG
Seq C2 exon
AATTCGATGACTGCACAATTGCTGGAGACCCTCACTATCGTACATTTGACAAATACAATCACCACTACCAAGGAGCGTATACCTATGTGTTGAGCCAAGACAACAATTTACCCAGCCACCTCACTCCTTTCATGGTCCGCGGCAAAAACCAGAGGCAAGGAGGTATCAGTCGGGTGTCCCTCCTGCGCGAGGTCTTTGTGGACGTGTACGGCATTACTGTCCGCATGCAACAGAATAAGAAAGTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000056781:ENSDART00000159818:40
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127142=TILa=PD(78.9=91.8)
A:
NA
C2:
PF0009420=VWD=PU(50.3=94.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATAACAGACCGCTGCACACAG
R:
AATGCCGTACACGTCCACAAA
Band lengths:
345-795
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]