RnoINT0004111 @ rn6
Intron Retention
Gene
ENSRNOG00000056032 | AABR07035780.1
Description
NA
Coordinates
chr12:22377432-22377980:+
Coord C1 exon
chr12:22377432-22377573
Coord A exon
chr12:22377574-22377735
Coord C2 exon
chr12:22377736-22377980
Length
162 bp
Sequences
Splice sites
5' ss Seq
ACAGTAAGG
5' ss Score
5.42
3' ss Seq
ACAGTCACACTTCTTGACAGAGC
3' ss Score
4.45
Exon sequences
Seq C1 exon
GCAGGCAAGACCTGGATCTCCAGCGGCTGCACCCAGAGCTGTGCTTGCACGGATGGGGTTATTCAGTGCCAGAATTTCATCTGCCCGTCAGGGTCCCACTGTCAGCACAATGATGATGGCAGCAGTGACTGTGCAGCCAACA
Seq A exon
GTAAGGGAGCCATGGGGGAGCGGGAAGGTGGGTAGGGTGCCCCATAGCTGAAAGAGTCAGAAACAGGGCTGGGTGAGGGTGATCAGAGCACCCCAGTGGGGAAGGTTCCGGAAGACCAGTAACAGGGCTGAGGTCCTTTTCAACAGTCACACTTCTTGACAG
Seq C2 exon
AGCTGGAAAAATGTACCATCTTTGGGGACCCCTATTACCACACGTTCGATGGCTTCACCTACCGCTTCCTGGGTCGTATGAACTACTATCTCATAAAGACACTGGACAAGCTCCCAAGAGGGATTGAGCCGCTGATCATGGAGGGGCGCAACAAAATATCCCCCAAGGGGAGCTCAACCTTGCACGAAGTGACCACCATCGTCTACGGCTATAAAATCCAGCTCCAAGAAGGCCTGGGGGTTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056032:ENSRNOT00000089026:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCACAATGATGATGGCAGCA
R:
ATAGCCGTAGACGATGGTGGT
Band lengths:
251-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]