DreINT0022912 @ danRer10
Intron Retention
Gene
ENSDARG00000028949 | ZBTB26
Description
zinc finger and BTB domain containing 26 [Source:HGNC Symbol;Acc:HGNC:23383]
Coordinates
chr5:64182779-64184357:-
Coord C1 exon
chr5:64184306-64184357
Coord A exon
chr5:64184026-64184305
Coord C2 exon
chr5:64182779-64184025
Length
280 bp
Sequences
Splice sites
5' ss Seq
CAGGTATTT
5' ss Score
7.51
3' ss Seq
ACCTGTACATTTTTAAATAGTAG
3' ss Score
3.86
Exon sequences
Seq C1 exon
TACAGGAGCTGCAGGACCAGAAAACACCCAGATAGAGACAAAACTGTCGCAG
Seq A exon
GTATTTATATTTTAAATGAAAACACGTTTACTTTATTCTTTTAACGATGTATCTTTACCGTCAGTTTTCTTTCATCCACTGTTTCTGCTTTAGCACAGTGCAGTTTCCAGGCCTGTACTAACGTTAACGTTATCAAGAGCATCGTGTCAACAAGAAATGTTCATACTATTAACAAACGCCATCAATGTTTGGATATAAATGTGTGCTTTAAAAGAAGTATACTCAAGATTTAACGATTTAAATCTGTCATATCTCTACTAACCTGTACATTTTTAAATAG
Seq C2 exon
TAGCCCACACCATGGCTCAGGACGGGGTGATACTGCAGTTCAACTTTGCCACATTCGGGGACTCCATGCTCCAAAAGATGGATGCTCTTCGTCGAGACAGGCGTTTTTGTGATGTGGTGGTCCGCATCAATGACTTGGAGGTGCCTGGACACAAAGTGGTGTTCGCTGCCGGCTCCCCTTTCCTCAGAGACCAGTTTGTCCTTCAGGACTCGAATGAAGTCCAAATAGCTACACAGCAGGATGCTGAGGTAGGTCAGAAGCTTCTTCTGTCCTGCTACACCGGGACGCTTCAGTTCCCAGAACTTGAATTAGTACACTATTTAACCGTAGCCAGCTTTCTGCAGATGGGTCATATTGTGGAGCAGTGCACCGAAGCGCTAAATAAATTCATAAAACCACATGAGGTCAAAGATGAGCGTGCATCATCGCGACAGCCTTCAGACTTTACCCCTCAGCGCAATCAAGCGGCTGTGAAGAAAGTGTGTGATGAAGAGGATGAGGTGGACAATGAAGAAGATGAGTTTGATGATGATGATGACGATGATGATGTGATCATACAGCCCAAATCTCCACCAGCGGTGTTTAGAAACAACAACAGTAGAGAAGACAGTCCGATTAGCATCGTTAAAGTGGAGTCATTAGATGAGCGCGTGCCTGACAACTTCCAGAGTCGCTCCAGTCGCAGTCGCTCCCCAACACTACGCTCACCTGAGCCACAACACTCCCTGATAAACTCCACCGTGGAAACCCGGCCTGCTGAAATCACCGTTAATCCCACAGCTGAATATTCAATGTCTACACCCGGACCTAGCGGATCTGGGAAGGGGAATCTATGGGGGGGATGCTCCAGGAACGGGGAGAAGAGCATGCAGTGGTACCACCAGTGCCCAAAATGCGCACGTGTATTTCGTCAGCTGGAGAACTACGCCAACCATCTGAAGATGCACAAGCTGTTTATGTGCCTCCTGTGTGGAAAGACGTTTACCCAGAAAGGAAACCTGCACCGGCACATGCGGGTCCACGCCGGCATCAAACCCTTCCAGTGTAAGATCTGCGGGAAGACGTTTACTCAGAAGTGCTCGCTGCTGGACCACCTGAACCTTCACAGCGGGGACAAACCACACCGCTGTAACTACTGCGACATGGTGTTTGCGCACAAACCAGTTCTCCGTAAACACCTGAAGCAGATCCATGGGAAAAACAGCTTTGATAATGCCAACGAAGGCAGTTTGCTGGAAGGATTATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000028949:ENSDART00000145831:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0065126=BTB=WD(100=25.5),PF0009621=zf-C2H2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=6.3),PF134651=zf-H2C2_2=WD(100=6.3)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGCAGGACCAGAAAACAC
R:
AGCTTCTGACCTACCTCAGCA
Band lengths:
308-588
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]