GgaINT1030332 @ galGal4
Intron Retention
Gene
ENSGALG00000001236 | ZBTB26
Description
zinc finger and BTB domain-containing protein 26 [Source:RefSeq peptide;Acc:NP_001264568]
Coordinates
chr17:8813084-8818432:-
Coord C1 exon
chr17:8818399-8818432
Coord A exon
chr17:8816575-8818398
Coord C2 exon
chr17:8813084-8816574
Length
1824 bp
Sequences
Splice sites
5' ss Seq
CAGGTACGC
5' ss Score
10.12
3' ss Seq
TCCTTGCTGCTTTCCTTTAGGTG
3' ss Score
11.55
Exon sequences
Seq C1 exon
GGTGCCGGCGGGGTGACGCGGCCCGGCGCTCCAG
Seq A exon
GTACGCGGCCCTTTTCTCCAGGCGCGGCGGCGTGGGCTGGGGGTGGGCGGGCGGCACAGCGATGCGAGCGGCCGGGGACGTTCCGGAGGGGTTCCCGACGATGAAGCGGCTGTTCTCCGCTTGGGCGCAGCCCCGGCTTGGGCTGCGAGAGGTGCTGCGCTTGTTGCTTGGCTTCTTGGCGTCCTTAGAGCCCGATAGCGGCAGCTTAACGTGCGCGAAGGCGAGTCGCTCGTTTTCGGTGTGCATTCAGTCACGGTTGGCCGAGACTTTTGCTTCACAGCCGTGGCTTTCATTGCCCGGACATGAAGTGTGTCAGACAACACTGGACTCGGGGCGACTCAGAGACGTGTGCCTTCACAGTCTGTCGGTGTAACGAAGTCAGTTGTGTTACTGATGCTGCCGCCCTCTCTGAATGTTCAGTCCATAGTTATGCAAACTATTGAAATCCCGTTGTAATTTCTGTACACCACACGCTGGTAGATGTATGTGGTGCACTCAAGTAATAAAGAGAGCACAGCTCAAATGATATCACATCAGAAAATTGAAACAACTCAGTGTGTCAGCAGATACTGCTGAAAGCGTTCCTCCTGGAACCCTTGTCTTGTGTGTTCGTTCATTTACACGAGGCACAGCTCCATTTCCTTTTGTGTACATTGAGCTAGTATTTCATGCCCCGAGAGAGCAGTATCTGCTTTTATCTATAAACTTCAAAGCGTCCTTTCCAGCTTAATGTGGTGTTTGTTTGTAATAGTGGTGAGGTGTAAGTTTGGGGTTGTTTTGCTATTGCATCTCACCAAAACTTGTGCCACTTGGTCGATCTTCTGTGATTTCCTTGCTTCCTGCAATCTCAGTTCTCTGTCAGGATTATGTGAAGTGTTTCATCAAGAATCAGTGTAGCCTTATAAACTCTTAAGAGAACTGTTGCAAGATAACATACTGGTATTTGTCCTGTAGAAAATCCACTGTTCTTCATTCCAAATAGAACAAAATTCCTCGAGGAGCGGTCTTTCAAAGAATGCAAGAAACAAGACTTCCTACATTCCCCACATGCTCAAATCAGAGAGCCTGGGAAGCATGATTTATAGAACAAGGAGTTATACGGAACATTTTTTCTTAGATCTTTTAAAAAGCACAGGACAGACTACCTGCTCCTCTTCATGTGCACACACAACACAACTTCAAGGCAGTGTAAAACAGTCACTGAAATCCAGTGCTGCTGGTACTGGAAGGCTTGTGTAGTCCTTTCTGCTAAGACAGGTCAATTGGACTTAGAGGTACTTCCAGAAAAACAATTTGTCTTATATCAATATTTCTGCAAATCATACAGTGTCTTAGAGGACCTGCAACTGTTATTCTTGGACTGTTTGCCTGTAAAGTAACGTGCAAGAGGGAATTTTCTATGTCTGGCAGATGCTGGGTTCTATCTCACAGTGCATTCATGTGTTATGAAAGCTCTTCAACATGAAAGTAAACAAAGAACCCAAAAGCTATAGGACTGTCACTGTATTTGGAAAAGACAAACATCTCTGAAGAATCTTATTGTGAAAGGAAAACTGTGCAAGAGCTAAGGCTGCTAAAATATTTGCATGATTTTTCCCTTTAAATTCCAGGAGTAATGTGGAAAACCTTGTAACTCTTTAGGATACTGCTTCAGGAGAATATCTGGCATTGTTTCTCCTTCGTAATCAAACTGCATCTTTTTTTTTTTTTTTTTAAGAAAAGGTACTTCCAGGCAATGTGTAACACAGACTTTTCTAATTTGTGTTCTGGAAACTAAGCAAAAAATTCTCACTTGTTTTTTTTTTCCTTGCTGCTTTCCTTTAG
Seq C2 exon
GTGTGCCAAAATGTCAGAAAGATCAGATATTCTTCACTTCAAGTTTGACAATTACGGCGATTCGATGTTACAGAAAATGAACAAACTGAGAGAAGAAAACAAATTTTGTGATGTTGTCGTCCATATAGATGATGTTGAAGTTCATGGGCATAAAATTGTATTTGCTGCTGGCTCTCCCTTTTTAAGAGATCAGTTCTTATTAAATGACTCTAGAGATGTAAAAATCTCTATCCTGCAAAGTTCGGAAGTAGGGAGGCAGTTGCTTTTGTCTTGTTACAGCGGCGTTCTGGAGTTTCCTGAAATGGAGCTGGTGAACTACTTAACTGCTGCGAGCTTTCTGCAGATGAGCCACATTGTTGAACGATGTACACAGGCACTCTGGAAGTTCATAAAACCGAAGCAGCCATTGGAGAGCAAAGAGTGTGAACAGCAAAGTGACTCCTCTGAGCTGAAGGACCACGGGGAAGATGAAGACTCTCTGCCACAAGATTCACCTTGTATTCAACCTTCAGAAGACAGTATGGACATGGAGGATAGTGATATTCAGATTATCAAGGTGGAGTCCATTGGGGAGGTAACAGAAGTTAGGAATAAGAAGGATCAGAACCAGTTTATTTCTTCTGAACAAACTGCACTGCATTCCTCTGAACCTCAACACTTTCTAATCAACTCCACCGTTGAAAACAGAGCAAGTGAAATAGAGCAAAACCACCTCCACAATTATGCCCTTTCATATGCTGGCAGTGATAACATCATTCTGGCCTCTAAAGATATGTTTGGGTCTAACAACCGTGGTATAGACAAAGGCCTCCAGTGGCACCATCAGTGTCCAAAGTGCACAAGAGTATTTCGGCATCTAGAAAACTATGCTAATCACTTAAAGATGCATAAACTATTCATGTGTCTCCTCTGTGGCAAGACATTCACTCAGAAGGGCAATCTCCACCGGCACATGAGAGTGCATGCAGGCATCAAACCGTTCCAATGTAAGATCTGTGGGAAAACCTTCTCTCAGAAATGTTCCTTACAGGACCATCTCAACCTGCACAGTGGGGACAAGCCCCATAAGTGTAACTACTGTGACATGGTTTTTGCGCATAAGCCCGTTCTGAGGAAACATCTTAAACAGCTACATGGTAAAAATAGCTTTGACAATGCCAATGAAAGAAATGTTCAAGACATAACGGTGGACTTCGATTCATTCACATGTAGCGCTGCTACAGACAGTAAGGTCTGTCAGCAGGCTGATGGAAGCCAGGTACTGGATGCAGGGAAGCTGCCTCAGGCTGTGCTCAGTTTAAGAAATGATAGTACCTGTGTCAATTAAGCAATTAAAAACAGCCCTTTGTAGGGATCATGACTGAGAGGAGCAAACAGTTGGCTTGGGCTCTTACCTAAACTAGTGGTATGCTCTGAAAGGCTTCTGATGGAGGGTTAGATTGCAAAACCTGGCAGGTCTTCAGCCATCGTTCTTAGTCTTACTTGATATTTTCTGTGAATAACAATCTTCCTTCAGGTTTCTGTCTGTGTCTCTACTGTGGACTAAGGGGTTAATTGTTTCATTTCTCTCTGATTAGGAGACTCAAGACTAACACCTTTTGAGAGACTGTTGCTGTGTGCTGCAAGTAAACCATCTGCTGTACAGTTAGAGGCTTCTCTGTGTCTGGGCAGATGGAGGAAAGAGCAAAGAGGACAAGTGTGAGATAACCCAATTGTTATTTTATAAAGCACTGGATCACTGAAAGCACTCCATATAGTGCTAATTTGTTTTAAACTTACCTCTTAACATTATTTTTGTCTGATCTTACCCCTAGATCCCTACCATTGAAATGAAGTATATTTGTGTCACTTTTTTCCCTTTCTAAACTATTTCAAGAAATTTCAGCTGCCAATTAACACTATCTTAAAAGCTCTCAGGGTTTTTAATGTTGGCATGCATTATGAAAAGGTGAAGCCCTGAATGATTTGGCAGGGTTAGTTGATCACTGCATAGAACTGTTCAAAATGAGAGTAGGTTGCAGCTCTGGAATGTGTGAGCTCGGCACCTGGAGTGCCAGGTATGACCTGTTTCATAAGCTGTCATACACAGAAGTATATAATGGCACTTACCATTGTATGTACTGATTCAAGGTAAGCACTTCAAAACTAGAGGTTGTCATCTATCTTCCATAAATTTTGTTGCAAATAACCACAACAGTTGCTACTTTCCTAATTGGTTTTAGAGCAGAGCTGGAGTGGAAAAACACTGCTTTTTGACACTGTGAAAAGAATCTGTTTTAAAAGCTGCAATGTATAGTAACTCCATGCTTTTTTTTCCCCCTTAACTCTTGTATATGTCTCCTTGATAACTAATAAGGGCCGCATGTCAGTTGATATGGAAAAAAAAAAGTACCTACCATAGGTAGGTAAGAACATTAACAACATGAAGTTTTTTGATTTCTTGGGTACTGAAAGGACATTTTTTCTTTAAAGTGACCCACATAATTCATGCCCATTAGCATTTTACAGAGCATAAGATGAGATATAGGTAGCATAATTTCCGTAGGTTAGTTTATCAGCTATTGACTGCACTCAGCAATACCTCATGTATACCGCCTTAAACATCAAATGTTGTGGGAATGGCATATTAGTTGGGGTTTTGGGACTATACTATATTACTTCACAAAAGTGCCATGGAATTACCCACATCCCAATCAGGCTGAGAGAAACAAATTTCTCATCTGTTAAACACCATTCCCAGTAGAACAGCATTCTTATATTGAAGTGTAGCACAGAATAATAATCAAGTGGCTGATCCTTGTTAGAGAACTGCTGTTTATGTTTGGAATAATTATTTCTTCCAATGCAGCTCTTTTCCTCAAGGTTTGCCATGAGGCTGAGATTATGCTTCCTACCTAAAAGTAGTATTGTTTGTGTGTTTGAATGAGGGGATAGGGTAGGGGGGAGGCTGCTATTGTATGGTTAAAAATGCTCAACAGGTATGACCAAAGGTGTGTTAGAGCAAAAAAATGTTTTGTATGTAATTATCAAAAGTTGGTCTTGGTCTTCAGATACGTGTATGTAGAAACCAGGATTTCCTTATGCAGACTTGACACTGATGAATGGTAAAAATGTGTTAATCTTGCAGACCATTTTCAGAAATCCACATACCTTCGAGTAGAAAAGCAAGGTGATTCTGTGAATCCGTTTTTGCAATTGAGTTTTTGAACTACTGTACTTGACTGTTACATTAACTATTATTACATGGACAGCTATGAAGTAATAAGCAGTGGAAATGGAGTTAGGGCATTATATCTTTCAAGTTGTAGCAAATATATTTAGGCCAAAAGTGTAACTTTTTGGAACTTCAAAAAAAAAAAAAATTCAGGTTCTTGGGGCAGAAAATAGGTAGGCATGGGAAGAAGAACTTTTTCCTCCTAAGTAACCTGCTTTCAGAATAACTTTGAGCTAAAAGAGATCATGACAGTTGCGTCTGACACTTGCATTCTGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001236:ENSGALT00000001877:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0065126=BTB=WD(100=23.7),PF059887=DUF899=WD(100=18.9),PF0009621=zf-C2H2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.9)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]