RnoINT0166968 @ rn6
Intron Retention
Gene
ENSRNOG00000026907 | Zbtb37
Description
zinc finger and BTB domain containing 37 [Source:RGD Symbol;Acc:1308731]
Coordinates
chr13:78849145-78851643:-
Coord C1 exon
chr13:78851448-78851643
Coord A exon
chr13:78850102-78851447
Coord C2 exon
chr13:78849145-78850101
Length
1346 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGA
5' ss Score
6.8
3' ss Seq
ATGGTTTGCTCTTTCAGCAGGGT
3' ss Score
5.85
Exon sequences
Seq C1 exon
CTCTCGCCCCTTCAGCGCCGACGCTAGAGAAAGACTTTACTCCAGGGGCTTCCTCCTCACTGGGGAATTGCTGGAAAGAGCAAACAAAAAGGTGCTGGTGTAGGCTCCAAAATAAACATCTGAATTCGTGATGGCATCGACCGAGGCTCTTAATGGATTAAAAGTTTCAAAACAAACAATAACGCTTTGGAAAAAG
Seq A exon
GTCAGATTGGTTAAAGTTGCTTCTTGAAAGCCGTGTTTGCACTTCCCTGTTTACTCAATAAGTGTGTTGTAAATGCGAGGTGATAATGTGAGCTTGTTAGAACAACTTCCTAGTGTGCTGTGTAGTCTCATAAACTTAGAGATAAATTGGGTGCACGGTGAGCCTAAATCCGTAAGTCATTGTGGTATATTCAAACTACCCTCAACTAAGATTACCTGATGCAGTTGCAGTCGGTTAGTGTGAAATTTCAGGCTTTACATTTGTCAGCTGTGGGAAACCAACTTTCCCAATCAAAATAACATCACCACTTTGGAATACCCAAGTTCGTGTTTGTTGGGGAGAAAAAGATTTAACTTAGTTTTTGCCAGCTCTGGAGACTAGGCCCCAAATTCTCACATGTTAATTGAATGCTGACAGGCCTGGGGAACGTTTCCTAACCTACAGTTTACCTCAGAGCCCATATTCAAAAAGTGGGAGCGCAAACTGGTAAAGCTTAAAAGTATGGGTCTAATCTGGCATGGTGGTCAAACACCCCTGGCACCAGCATTCTTTAACCTCGGCAGAGGCAGTCAGATCTCTGAGTTAGAAACCAGATGATCTACATAGTGAGTTTCAGGAAGAGCCAGGGATACACAGACCCCATCTCAAACAAATACCTAGTGTGGTGGCTTCATTCTTGCATTCCTAGAGGCAGAGGCAGGTAGATCTCAGTTCCAGGCTAGCCTGGTCTACAGAGCAAGTTAGAGCATCCAGAGCTACACGGAGAAACACTGTCTCGGGGAAAAAGTGATAATAGTGGCCGTTCACGTAGGATATTAATCACTTCATAAACACCTTGTGCCACATGTAAATTACAGTCAACCTGTATGTGTTTGATGCCCCTTCTTAATGAACTCCTATCTTTGTTATATAGCTTATAAATAAAGTATGGGCATAGCTTGAATTTTTCTCAGTGTAGCAATCACTTTTTTTGTGTGTGTTATTTTACTGTGAAATCTAAAACACCTTGTGCCGGGCTTAGCAGCTTACAGTAATCCTAGTACTTAGACGTAGGATCAGGAGGTTGAGGCCAGCCTTAGTCTAAGACCTTGTCATTAACAAAACACCTGCTGGCAATTCTGTTTCTACATCCAAACACGAGGGGAATTCCTTTTTTCTTCCTGAGACAAGATTTCACCTATGTAGCCCAGACTCATGATTCTCTTGCCTCAGTGTCCCATGTGCTAAAATTATGTATGTGTGTACCTAGCCCTGGTGGGAAGATGTTAAACTTTTAGGGATGTTTGCACTAGAAAGCACAAAGGGAGTCAAACTAGCACTAAGACTATGGTTTGCTCTTTCAGCAG
Seq C2 exon
GGTTGAACGTCTGCCTGTACTTTCAGGCATGACCATGGAGAAAAGTGGAAACATACAACTGGAGATCCCTGACTTCAGCAACTCTGTTCTGAGCCATCTCAACCAGCTACGAATGCAAGGCCGTCTCTGTGATATTGTGGTCAATGTGCAAGGACAGGCTTTCCGGGCTCACAAAGTAGTGCTGGCTGCCAGCTCCCCTTATTTCCGGGATCACATGTCCTTGAATGAAATGAGTACTGTGTCCATTTCTGTCATCAAGAACCCTACTGTTTTTGAACAGCTTCTTTCTTTCTGTTACACAGGGCGGATATGCCTGCAACTAGCAGATATCATCAGCTACCTAACAGCTGCTAGTTTTCTGCAGATGCAGCATATTATAGACAAATGCACACAGATCCTAGAGGGCATTCACTTTAAAATTAATGTGGCTGAGGTTGAAGCAGAATTAAGTCAAACAAGGACAAAGCATCCAGAGAGACCTCCAGAGTCTCACAGGGTAACACCGAATCTAACCCGCTCACTTAGTCCACGCCATAATGCCTCAAAGGGAAACTGGAGAGGACAAGTCAGTGCCGTGCTGGATATCAGAGAGCTCAGTCCTCCCGAGGAGTCCACCAGTCCTCAGATAATTGAACAGAGTTCTGATGTAGAGGGCCGGGAGCCCATTCTCCGAATTAACAGAGCAGGACAGTGGTATGTGGAAACAGGGATAGCAGACCAGGGGCCCCAGAGTGGTGATGAAGTCAGGGTTCTTGGAGCAGTGCACATCAAAACTGAAAATCTGGAGGAGTGGCTTGGGCCGGAGAACCAGCCTTCTGGAGAAGATGGCAGTAGTGCCGAGGAGGTCGCTGCCATGGTGATTGACACCACAGGCCATGGGTCTGTAGGGCAAGAAAGCTACACTTTAGGGTCTTCGGGAGCCAAGGTAGCTCGGCCAACCAGCAGTGAGGTCGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026907:ENSRNOT00000039082:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.455
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0065126=BTB=WD(100=33.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTACTCCAGGGGCTTCCTCC
R:
AGCCAGCACTACTTTGTGAGC
Band lengths:
348-1694
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]