MmuINT0177680 @ mm9
Intron Retention
Gene
ENSMUSG00000043467 | Zbtb37
Description
zinc finger and BTB domain containing 37 [Source:MGI Symbol;Acc:MGI:2444467]
Coordinates
chr1:162961936-162964390:-
Coord C1 exon
chr1:162964219-162964390
Coord A exon
chr1:162962896-162964218
Coord C2 exon
chr1:162961936-162962895
Length
1323 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGA
5' ss Score
6.8
3' ss Seq
ACTGTGCTTTGCTCTTTCAGCAG
3' ss Score
9.88
Exon sequences
Seq C1 exon
AGAGAAAGACTTTACTCCAGGGGCTTCCTCCTCACTGGGGAATCGCTGGAAAGAGCAAACAAAAAAGGCGCTGGTGTAGGCTCCAAAATAAACATCTGAATTCGTGATGGCATCGACAGAGGCACTTAATGGATTAAAAGTTTCAAAACAAACAATAACGCTTTGGAAAAAG
Seq A exon
GTCAGATTGGTTAAAGTTGCGTCTTGAAAGCCGTGTTTGCACTTACCTGTTTACTCAATAAGTGTATTGTAAATGCGAGGTGATAAAGTGAGCTTGTCCGGACTACTTCCTGGTGTGCTGTGTAGTCTCATAAATTTAGAGAAACATTGGATGCACGGTGAGCCTAAATCCTTGTGGTATACTGGAACTACCCTCAACTAATTAAGACTATTTGATGCAATTGCAGTCTTTGTGGTGTGAAATTTCAGGCTTTATTTTTGTCAGCAGCTGTGGGAAACCAACTTTCCCAGTCAAAGTAGCATCACCACTTTGGAATACCCAAGTTTCAAGTTTGTTGGGGAGAAAAAGTATTACTTAGTTTTTGCTAACTCTGGCAACTAGGCCACAAATTCTCTGCATGTGAATTGAATGCTGACAGGGCTGTGGAATGTTTCTCAGAGTCACCTCAGAGTCCCATATTCAAAAAGTGGGAGCTCAAACTGGTAAGCTTAAAAATATGGGCCTAATCGGGCATGGTAGTCAAACACCTCTAACACGAGCATTCTTTAATCTCAGCAGAAGCAGTCAGCTCTTTTTGAGTTAGAAACCAGATGGTCTACATAGTGAGTTCCAGGAATAGCCTGGGCTTCATAGACCCTGTCAAAAACAAATATCTGGTGGGTGGCTTAATTCTAGCATTCCTGGAGGTAGATCGCTAAGTTCCAGGCTAGTCTGGTCTACTGAGCAAGTTATAGGGCATCCAGAGCTATATAGAGGGACACTGTCTCATGGGGAAAAGTAGTGATAATAGCGACCATTCATGTAGGATATTAGACTTTATACCCAATCTGTATGTGTTTGATGCCCCTTCTTAGTGAACTCCTGTCTTTATTTTATATAGTCTACTAATAAAGTATGGGCATAGCTTGAATTTTTCGCAGTGTAGCAGTCACTTTTTTGTGTGTTAATTACATTTTACAGTGAAATCTAAAATACCTTGTACCAGGCTCGGCAGCTTACAGTAATCCTAGCACTTAGGAGGTAGGATCAGGAGTTTGAGGCCAGCCTTATTACTAACAAAACACCTGCTGGCAATTCTGTTTCTACATCCAAACATAAGGAAGATCTCTCTTTCTATATGAAGAATTCTTTTTTTCTCCCTGAGACAAGATTTCACTTATTTAGCCCATACTCATGATTCTCCTGCCTCTTCGGTTTTCCAAGCGCTAAAATTACGTATGTGTAGCTGGCACTCATGGAAAGATTTTCCATTTGTAGGGATGTTTGAACTAAAAAGCACAAAGGGAGTCAAACTAGTACTAAGACTGTGCTTTGCTCTTTCAG
Seq C2 exon
CAGGGTTGAATGTCTGCCTGTGCTTTCAGGCATGACCATGGAGAAAAGTGGGAACATACAATTGGAGATCCCCGACTTCAGCAACTCTGTTCTGAGCCATCTCAACCAGCTACGAATGCAAGGCCGGCTCTGTGATATTGTGGTCAATGTGCAAGGACAAGCTTTTCGGGCTCACAAAGTAGTACTGGCTGCCAGCTCCCCTTATTTCCGGGATCACATGTCCTTGAATGAAATGAGTACTGTGTCCATTTCTGTCATCAAGAACCCTACTGTTTTTGAGCAACTTCTTTCTTTCTGTTACACAGGGCGGATATGCCTGCAACTAGCAGATATCATCAGCTACCTAACAGCTGCTAGTTTTCTGCAGATGCAGCATATTATAGACAAATGTACGCAGATCCTAGAGGGCATTCACTTCAAAATTAATGTGGCTGAGGTTGAAGCAGAATTAAGTCAAACAAGGACAAAGCATCAAGAGAGACCTCCAGAGTCTCATAGGGCTACACCAAATCTAAACCGCTCACTTAGTCCACGGCATAATGCCTCAAAGGGAAACTGGAGAGGGCAGGTCAGTGCCGTGCTGGATATCCGAGAGCTCAGTCCCCCGGAGGAGCCCACCAGTCCTCAGATAATTGAACAGAGTTCTGATGCAGAAGGCCGGGAGCCCATTCTTCGAATCAACAGAGCAGGACAGTGGTATGTGGAAACAGGACTAGCAGACCAGGGGGCCCGGAGTGGTGACGAAGTTAGGGTTCTTGGAGCAGTGCACATCAAAACTGAAAATCTAGAAGAGTGGCTTGGGCCAGAGAATCAGCCTTCTGGAGAAGATGGGAGTAGTGCAGAGGAAGTCACAGCCATGGTGATTGACACCACAGGCCATGGTTCTATAGGACAGGAAAGTTATACTTTAGGGTCTTCAGGAGCCAAGGTAGCTCGGCCAACCAGCAGTGAAGTTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000043467-Zbtb37:NM_173424:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.481
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0065126=BTB=WD(100=35.5)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAATCGCTGGAAAGAGCAA
R:
GGAAATAAGGGGAGCTGGCAG
Band lengths:
344-1667
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: