HsaINT0184605 @ hg19
Intron Retention
Gene
ENSG00000185278 | ZBTB37
Description
zinc finger and BTB domain containing 37 [Source:HGNC Symbol;Acc:28365]
Coordinates
chr1:173838063-173840286:+
Coord C1 exon
chr1:173838063-173838258
Coord A exon
chr1:173838259-173839334
Coord C2 exon
chr1:173839335-173840286
Length
1076 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGA
5' ss Score
6.8
3' ss Seq
AATATGGTTTCTTTTTTCAGCAG
3' ss Score
6.85
Exon sequences
Seq C1 exon
CTCTCACCCCTCCAGTGCCGACGGTAGCGAAAGACTTTCCTCCAGGGGCTTCCTCACTGGGGAATTGCCGGAAAGAGCAAACAAAAAAGGCGCTGGTGTAGGCTCCAAAATAAACACATCTGAATTCATGATGGCATCGACAGAGGCTCTTATTGGATTAAAAGTTTCAAAACAAACAATAACGCTTTGGAAAAAG
Seq A exon
GTCAGATTGGCTAAAGTTGATTGTTGAAAACAGTGTATACACTTCCCTATTTAATAAGTGTGTTGTTAATGCGGGGCAGTACTGTGAGCTTGGCAGAGTAAGTTCCTGAAGTTTCAGGTGTGGTGTAACTATGTAATATATAGATAAGTGAACGCACATTGGGCTTAAGTAAATGTCTTCCTGTTCGGATTTATACAAACTATTTTCAGTAGTTGAAACTGTACTTTCAACTATCTTGTATACAGCTTCAGGTTTAGTGTTTCAGCCATTTTTTAAAAATATTTTAATGGAAAAATGTTGGCATACTTGGTAAATGCTGTATTTTTTCATCGGATCTGGAGAACTAAGTTTCAGGATGGAAGTATTCATCACCACCTCGGAATTGCCAACTTCGAATTTGGCAGATTTACCCAGCTTTCCTAATTTTGACAACTGAACTTCACATTCTCTGCATCTTGGTTGAATCCTGGCACAGCTGTGGGATTTTTCCTAGAGTTTGCTTCACAGCCCTATAACCAAAGTCTTTTTGTGGGGGGGGCTCTGATTCTTAAGCTTAGAAATATTAGCCTACATTCATGTGGGATATTAGTCCTTTTATAAAATAATAAACATAATTCTTGCAGCAGGTAGTAAAATACTAAGAAGAGGGATATCAAGCTATGTAGAATTGCATTTATTCAGAAAGCTTTCCTCCTCCAGAGAAAAGTTGTAAAGTTATGAGATGTTATATTCAGTCTGCAAGTACCTTATAGTTAACACTTAAAAGTCCTTCCCCCTACCTTCTGTTGAACTTCTGTTTTGATGTTATATAACTTATTAGTAAGGAAAGCATGGTCATAACATGAATTTTTAGGAGTCTAAAGATCACTTTTTAGTTTTAACTATGTCCTCCTGTGAAACTTAAACTGAAAAACCTGTTGGTGATTCTGTTTCCACATCTAAATATAAGGAAGGTATTTCTTTTATCTGGAGATTTTGAAACTTTACCAGATAACTATGTTTAAATACTTTTGAAATGGAAACCATCCGGGAAGTAAAATTATAATTATTAATGAGAATATGGTTTCTTTTTTCAG
Seq C2 exon
CAGGGTTGAATGCACCCTCAGGCACGACCATGGAGAAAGGTGGGAACATACAATTGGAGATTCCTGACTTCAGCAACTCTGTCCTGAGCCATCTAAACCAGTTGCGCATGCAGGGCCGTCTCTGTGATATTGTGGTCAATGTGCAAGGACAAGCTTTTCGGGCTCACAAAGTGGTGCTGGCTGCCAGCTCCCCCTATTTCCGGGATCACATGTCCTTGAATGAGATGAGTACAGTCTCCATTTCAGTCATCAAGAACCCTACTGTTTTTGAACAGCTCCTTTCTTTCTGTTACACAGGGCGGATATGCCTGCAACTGGCAGATATCATCAGCTACCTAACAGCTGCCAGTTTTCTGCAAATGCAGCATATTATAGACAAATGTACACAGATCCTGGAGGGCATTCATTTCAAAATTAATGTGGCTGAGGTTGAAGCAGAATTAAGTCAAACAAGGACAAAGCATCAAGAGAGACCTCCAGAGTCTCACAGGGTTACACCAAATCTCAACCGCTCCCTTAGCCCACGACATAATACCCCAAAGGGAAACCGGCGAGGTCAGGTTAGTGCTGTGCTGGATATCAGAGAGCTAAGTCCTCCTGAGGAGTCCACCAGCCCTCAGATCATTGAACCAAGTTCTGATGTAGAGAGCCGGGAGCCCATTCTTCGGATCAACCGAGCAGGACAGTGGTATGTGGAGACAGGAGTGGCGGACCGTGGGGGTCGGAGTGATGATGAAGTTAGAGTTCTTGGAGCAGTACACATCAAAACTGAAAATCTGGAGGAGTGGCTTGGGCCTGAGAATCAGCCTTCTGGAGAAGATGGGAGTAGTGCAGAGGAAGTAACAGCCATGGTGATTGATACCACAGGCCATGGTTCTGTAGGACAGGAAAATTATACTTTAGGGTCTTCAGGAGCCAAGGTGGCTCGGCCAACAAGCAGTGAAGTTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000185278-ZBTB37:NM_001122770:2
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.522
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0065126=BTB=WD(100=34.1)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGAAAGACTTTCCTCCAGGG
R:
ACTTTGTGAGCCCGAAAAGCT
Band lengths:
342-1418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)