DreINT0025531 @ danRer10
Intron Retention
Gene
ENSDARG00000010752 | acsl4b
Description
acyl-CoA synthetase long-chain family member 4b [Source:ZFIN;Acc:ZDB-GENE-030131-6493]
Coordinates
chr5:23067690-23070434:-
Coord C1 exon
chr5:23070041-23070434
Coord A exon
chr5:23067924-23070040
Coord C2 exon
chr5:23067690-23067923
Length
2117 bp
Sequences
Splice sites
5' ss Seq
TTGGTAGGA
5' ss Score
5
3' ss Seq
TGTGTGTGTTGTGTGTGCAGGTC
3' ss Score
10.58
Exon sequences
Seq C1 exon
AATCAACAGAGGGAGTGTTTGACTTACTGAACTATGTGTTCTTTAATGTCTGTAAAAGTTCTTAGCTCTGACGTGTCTGATTGTGTAAGTGAGCTAAAGGAAAAACTGTTTGGCAAGACTGCGTGTACAAAGGAAACACCTCCTGTCTGATATATTCCCTCTGAAAACTCAGACGAAACCTCAGAAGTTCCTCCTCATCGCTGCTTTCTGATTGGCTTATTCTAACGGGTGGGCCCAAAACGAGGCTTACTGGAATTGCGGCTACAAAATACAACCAATCAGCCAAAAGAGACACAGAAAGAGAGAGAGAGTGAGAAAAGGGAAGCCTGGACCTCTTGTTGCAGTTGTTGGCCGTCTGTCTAAAGAAGAACTGCTGTGCTCTGTTTATTCGTTG
Seq A exon
GTAGGAATTCAGCTTCTTTTACTTTTTTGCCTTGAGTATTTCGTTTGACTAAATGAAGATGCTTTCTATCTCGGATTTAATGCTGTGTATCTGCAGTGAGGATGTGTTTGGAGAGACTTGAAGTGTTTACTGTAAACACCATGTCAACTGCATGTCTAAACAGTTGTTGTTGATATTACTGGAAATAAAAGCTATTTGTATTTGAGATCTATTGATCAGATATAACTAAAACTCTTGTGTATGTTAAGTCATTTTTTTTTTACCTTAACACTTTTGGATGAATAGTTATTACTTTAGTAAATGTATCTTATGTTTTATATATGAAGTATAATAGTATGTATTATTCATAAAATGAAGTAAAAAATACAGATGACACCGTTAATTTTTGTCAAAATTTACATTCAGTGCACGTACAAATAAAATAGTTTTTAGTCAACACTATGAGAAATATACTGTATGCTCACACTGTTTATAATTCTCTGATAATGCTTAAATGTTTCATGTTACAGTTTATTAGCATTTGTACATTGAAACAGTATTTGCTATTTAAAGAAGAGCTTAAAGAAGGAAGCTGTAGGAGTGTTGTTTATTGTTAATGTTAAATACTTTAACTGATGCTAAAATTGGCGTTTTAAATAAAATACTACTCTTATATGTGGCTATTTAAAAACATTTATCATTCTGTTCTGGTTTGGGGTTTAAGGAAGTCTCTCCTGTTTTCAGTGTTTCTGTGTATTTTAAAAAAATTATAATTTATTCCTGTTATATAAAAAAAACTGATCTTTCAGTAGCCATACTTTCTCTTTTTCCATACATTCAGTAGTATTAATGTTCTTCAGAAATCATTCACACAGTTTTAGAAACATTTAAGATTAAATAGATCAAGAAACATTAGTTATTATTGTCTATGTTGAAAAAAGTTTACATTTTTTGATGCATTTTTCCTCAGCAATTGTTAAATCTAAAAAAAAGTTTGCTATATTAGCAGAGTTACAATTTTCTTTTAAAAAATACTTTTTGAAAAAAAAAAAAATCTACCAAGCCCCAATTTCTGTATGGTATCATATATTGCTCAAAAACAGACCAGACAACCTGATGACATAATTTTCTGATTCATCTACCTTTTCACGTTAGAAAAATGTGATTACTCCACACAGGATGCGAGTTTGCTTGACAGATGCCTCAGTGTTTTAGACAGTTTTTCCACATGTTTAAGTGGGTCAACATCTGACTTCCTGAACGTGCAGTCGCTCGAATCCCTCCTTAAACTATGATGTCATCTGTTTGAAACGGTGGTCTCAATAATAGTAATTTGTTCATTCACAGCCAAACAATCATCAGGATAATTGAACTTGTGCTTCTGAAACAAGTTTCAGTGGCTTTTTCTGTCCTAACTACAGTTAAAGTCTGAAGTATTAAACCCCCTGAATTATTTGTCCCCTGTTTATTTTTTCCCCAATTTCTGTTAACGGAGAGAAGATTTTTTTAGCACATTTCTAAACATAATAGTTTCAATAACTCTTTTCTAATGACTGATTTATTTGATCTTTTCCATGATGACAGTAAATAATAATAATTATTATTACAGTAAGTAATAATTTTGACTTCAACTGTACAAAAAATTAAAAAGTAAAAATTTTACCTCTCTGTTGAAATTAATGATTATTTTGCCACGCAAACAACCTACACATCCACTTTGTGTTTGATCTGATGTCACTCTGTGTATGTGTGTGTATCTGTGTTGCTTAGAATAAATATTTAGTCTGATAGTGCACTGCCTACAAACACGGATGTTTCTTGATGCTTCCTAAGGGTTTGTTGAGTGTTAGCAGTTGGTTTGTGGTGAAGTACTTGCTAAATCAGCCATTCAATCACACGCACATGCATCTAAATTTTCTTACTCTTCCTGTTTTCCTCTTTTTGACAATTACTTTTTGTCTAACCAATAGAAAACAGTTTTTCTGTGTCTTCTCAGTCACCCACAGGGGTTTCTGCTCTAATTCTGGACACAAAGAGAGGATTGAAGTTCCTGATCATGTGTTTTTACTATTTCCGTCCTCAATGATTGATGATTGATCAAATGAAAATATGTTGGTCTGTGTGTGTTGTGTGTGCAG
Seq C2 exon
GTCATGTTGCCTCAGTGTGAGAGAGCGAGGAGTATAAGTGGACGTCCAGAAGGGCCGTATCGGGCGGTTGAAAGCATCGATGCACTGGTTACGCAGGGCTTTGAAGGAGTGGACACTCTGGACAAACTTTTTGTACATGCTGTGAAGAGTTTCAATCAGGCACCCTGTTTGGGCACCAGAGAGGTGCTTAGCGAAGAAGAAGAAAAACAACCCAATGGGAAGATCTTCAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000010752:ENSDART00000002453:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.104
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0050123=AMP-binding=PU(3.1=19.5)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]