HsaINT0002922 @ hg19
Intron Retention
Gene
ENSG00000068366 | ACSL4
Description
acyl-CoA synthetase long-chain family member 4 [Source:HGNC Symbol;Acc:3571]
Coordinates
chrX:108926365-108928673:-
Coord C1 exon
chrX:108928656-108928673
Coord A exon
chrX:108926896-108928655
Coord C2 exon
chrX:108926365-108926895
Length
1760 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
3' ss Seq
TTCATTGTCATCACCTACAGGCG
3' ss Score
8.49
Exon sequences
Seq C1 exon
TAGCTTTCTCAGTTGAAG
Seq A exon
GTAAGCTCCTTAAAAAATGTTCCTATTCTTGGGCCGGGTGTGGTGGCCCCCGCCTGTAATCCCAGCACTTTGGGAGGCCATTGAGGGCAGATAGCTTGAGTCCAGGATTTTGAGAACAGCCTGAGCAACAATGGCAAAACCCCGTCTCTACAAAAAATGGAAAAAAACTAGCCAGGCATGGTGATGCACATCTGTGTTCCCAGCTACTCGGGAGGCTGAGGTGGGAGGATCTTTTGAGTCCGGGAGGCAGAGGTTGCAGTGAGCTGAGATCATGCCACTGCACTCTGGCCCGTGTGACAAAGTGAGACCTTGTCTCAAAAAAAAAAAAAAAAAAAAAAGAAAGAAAAGAAATATTACTATTCTTGAGCCTGTTTCTGCGGTTTCTTTCCAATGGCACTGTTTTTCTAACCTGCAGCAGCCCCCAGCTTTCCACATAATCCAATCAAAATTACTTTGCCTGATTTGTTAGATTTTGTAACTACCGTAGCGTATTTAGTCAAGCGTATTTAGCGTATTTAGTGTATGCTGTGCCCCAGTCAGACTAGTGTCCTTGCTATTGGTACTTCCTATTCTCCCAAAGTCCTTTCATTCCCACCTTCGTATCTTTTTTCATATGGTCCCTGAGCCTGGAATACCTTCCATTCCTCTTTCATTTCTAGATGCCCAACATAAGGTCCAGCTTAAATCTAATCTCCACAAAGCCTCTCCTAGTTACTCTTGGCCATTTTGCACTTCCTCTGAACTCCTTTTGCATTTATTGCTTATACTACTGCCTACACTGCACATGGTAGTTATGTATTAGTTATGTATTACCACAAGGCTTTTCAGTGGAAATGCTTTAGTGGTCACCTTGGGAGTTGGGATTCCGGGAATTCTGGGGCAGGACTCTGGACATCCCCAAACCCTGTTTTGGCCAGAGCAACTCCACTTTAGTGTTATATATGGGCAGTTTCCAGTAGTGTTTATTAGAAGAGATGGTTTAATTGCACCCCCTGTCCCCGTTCCCCCAAACAGTTGCAAAAATACTGGATCTATCTTGTGTGATAGTTGACTCATAAGTGTTAACTTATAATGGCCAAGGGCCAGGAATTAATACTACTTCAGACTTGTATTACCACTCCTAGGCAACTGGTGCAGTTTTGAGCACAAAGTGGACATGTAGGAAATGATTTTACAATTGTATTGCTCCCATGTGGGAAATAGTAGATAGTAAATAGCATTACCTGAGAAATTTACCTTAATGAAGAACTCAGAATAAGGTTTCTGGGTTGACCTTTGAGAAATAAATCTAAGTTGATAGTTTCTGCCCCACCCCCCCCTTTGGATATAAACCTAACACTATTTAAAGATGTCTAGTTTACATGCACATGTTTAAGAGAAATCTTATTATTGGCATACCCTATTCTACCAAAGTTTTGACAAACTTAAATATCATATTCATGCATTTGTGTAAGCATTAAGGTTGTTATTCAACTCACAGAATGATATGCAGAGTACCAGTACACCTAGAAACCTAGAAAAAAATAAATTCAGAAGTTGATGTGCTCAAAGACATTTACGTCAATAATGATTACAAATGGAAAATGCCAGCCTTTCAGACCAGTTATTTCAGCTTTCTGTAATTAATTGTGTAAACTAATAAAGACCTGAGTATTTAAATCAATTGTGCTATCAACTTGTTAATATTCTTTTGTTTTTGTTTTTTGTTTTTTGTTTTTATTTTTCCTGCTCTCTGCTTGGTTCATTGTCATCACCTACAG
Seq C2 exon
GCGTACTTTATTGTCGGCTTCCAAAGATTACTAACTTTTATCTGTATCACTAAGATTGAACTGCCTTGGCTGTACTGCTATTCTTACTGCTGCTTCTATTATTGCCTTCTTCAGCACAATAAGGCTTTCAAAAGCCAAAGAATAACAAGAAATAAGCACCATTTTAGAAGCCTTTCCACTATGAAACTTAAGCTAAATGTGCTCACCATTATTTTGCTGCCTGTCCACTTGTTAATAACAATATACAGTGCCCTTATATTTATTCCATGGTATTTTCTTACCAATGCCAAGAAGAAAAACGCTATGGCAAAGAGAATAAAAGCTAAGCCCACTTCAGACAAACCTGGAAGTCCATATCGCTCTGTCACACACTTCGACTCACTAGCTGTAATAGACATCCCTGGAGCAGATACTCTGGATAAATTATTTGACCATGCTGTATCCAAGTTTGGGAAGAAGGACAGCCTTGGGACCAGGGAAATCCTAAGTGAAGAAAATGAAATGCAGCCAAATGGAAAAGTTTTTAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000068366-ACSL4:NM_022977:3
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.120
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0050123=AMP-binding=PU(16.0=19.7)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)