GgaINT0068009 @ galGal3
Intron Retention
Gene
ENSGALG00000008088 | ACSL4
Description
NA
Coordinates
chr4:13883295-13886044:+
Coord C1 exon
chr4:13883295-13883341
Coord A exon
chr4:13883342-13885804
Coord C2 exon
chr4:13885805-13886044
Length
2463 bp
Sequences
Splice sites
5' ss Seq
CTTGTAAGT
5' ss Score
8
3' ss Seq
ATTTTCTTACCAACGCTAAGAAG
3' ss Score
-2.07
Exon sequences
Seq C1 exon
ATTTAACTGACATCGAATAAAACTTGGACATCGCTGTCAGATACCTT
Seq A exon
GTAAGTATACATATGTGTGTATAGGTATATATGCATGTGTGTGCATGTATCTGTTTTTAAAAGAATATGCTCAAAGGGAAAAGTAACGTTCTTCTTCTTTGGACTCAGCAAGTTTTTCCACCCTATCGCTGTTAAGCATTCCAACTGATTTATGTCAGAATAGAAGCATTTCAAATTACCACAATGAGAAGACAGTAGCTAAGTTCTCAGTTTATAAACACTTCTAAAAGTATTTCAAACTAGTCTGAAATGTCAAGATGAAAGTAATGCAATCTTTAACGTTTGCTTATGTGATCTTTGACATAATTGCCTGCAAGCACACAAAGTGTGTTTGTGCGTGCAATTAATTCAGATGTTAGGAGTGATTTCAGCAGGGTATCAATCTTAGAACACAACCTTCTTTCCCATTAAGACCCTTTAGTCATTATTTTATTATTTCAGGCAGATGTTCTGATGAGGTTTCTGTGTTAGTCTTAGCAGTATGGCTGGCATTTGTTTTACGTACAAGCTCAACTGCATCTTTCGGAGCACTGAATTAACTGGGATGAGAACATCAAGCAAGGTTTGTGATATAAACCACTGACCTTCATTTTAGAGAACTGGTGCTTGCAGGGGAAGTGGAGTGATCTCTCTTCTTCTGAGGTTTGACTGTTTGCTGAGCAACTGACGATGAAGTTAACTAAAGCAGAACGAGGACATAAGCTTTGAAAAGAATGTCGAATTTTCTTTTAAGAAAAGATTCTTTCTGAACAAGTCTGAGCTTAGTTTAGTACATGACACATTCAGTAGTCATTTCAGACTACAGGTTTAATTCAGAATGTAACAACATGGTGATCATGTTATTTTGAGTATGCGAAGATCTCTCAATCTTACATTACATATTGTTGATATTGGCTACAGCACAACTGCAAACGTTGGGAGTCTTATTAAAAACCAACAGCCTATTAATAGATCTCTGTTGTGCTATCAGTAGCAGCTGTCTTGTTTAACCTGAAACGTTAATTGTAGCCTCCCTCACCTGGGGTGGAAAACACGTTAATAAAGACACGCTCTGGGGTGTGCCTACATTCTTTTAATGCTTGATGGAGCCCTGAAAATTTCCCTATTCCTATGTATTTTGTTTATTAGATCTTGTCCGTGATCTTTCCTATAAGCTAGTCAGCAGTGCTCCCTTATGTGTCTGAGGTACCGTGTTTTTGTCAGCGTACCTTTGCCTTTCATGTTTCCTGTTCTGTGCATTGTTTGTGCTGTGTTTGCATGCCGTGTTTGCATGCTGTCCAGGTGAAGATAAGCACCTGTGTCATTTGTGTGCCAGTACAGACCAGTTACAGACAAGAGAGGTGACCACCACTGTGGTTTGTGAGGTGGTTTTGTTCTTCCCCCACTTTGGTCTTTATTCAGGCCCAGTTCTCCTTAATGAAGAAAGGTTTCTGACAAAATCTTGCTAAATTGTGCTTCATTTTAAATTAGATTCCATTTTCCATACCCGGAGTTCTGAAATGCATATGCTGAAATAGGGTGCGATTATTGTTTTTAATTCTTTTGGAGGGATGGTTAAATAAGTGCAATCCCTTGTCAGAAGTCTGACATTCATAGTAAAACATTAAGTGATCAATACAGATGTTGGTGTGAGGTTAATAAAGCAATTGTTGGGGTATTGTTTTGTTCTTAGATTAAAACATGAAGGTTTTTGAGGACTCTATCAAAATACATTTTAATCTGAATGTAAGTTGATTTAACATTCTGAAAGGCAGTAAAGACACCTACTCTATCTTTCCACTGCAATACAAATATTTAGGGGGAAAACAGATTGCCCTTTCCCATCATTACACAACTGTAGCATTACACAAGCAGTTTAAACACAAAATTAAGCAGTAAGAGAACAGACTTCATATTTGCAGCCCTGAACTATTCCAACAGAGATAGAGGGGGGGAAAGTCGTTGAAAAGTAAATATTTGTGGATGGAACAAACAAATATGGAAGAGTCACCCTCTTTGATCTCAGAGCAGATGCACTGATACATCATGCAACCACATGTATCGGTTAATTCAGTCTCCTTGGTCTTGATGCATTTGAGGTGGAATCTTAAAGGACTAGAACTAATGGACTGACTGTAATACTAATTTAATTCTCCTTTTTTTTTTTTTTTCCTGCTCTCTGCTTGGCTCTGGTCTTCACCCACAGGAGTCCACTGCTGGCTCTCAAAGGTTACTAAAATCTTAGCGGCTGCCTTGAAACCGAGCTATCTAAGCTTCACTTACTGTTGCTTCTCCCTACACCATACTGCACTGCTGCTTTTGCTCTTGCCTGGTCAGAACGCACTAAGAGATTTTCTTTTTCAAATACCCACAATGAAACTTAGGCTAGAAGTATGTGCCATTCTTTTGCTGCCTGTGTACTTGTTAATATCTGTATACAGTATGCTTGTATTTATTCCGTGGTATTTTCTTACCAACGCTAAG
Seq C2 exon
AAGAAAAAGGCTATGGCAAAACGTTTAAAAGCTAAGCCCATCTCGGACAAACCTGGAAGCCCCTACCGCTCCGTCACTCATCTTGACTCACTAGCAAACATAAACATTCCTGGAGCAGACACGTTGGACAAACTGTTTGACCACGCGTTAGCAAAGTTTGGGAAAAAGGACTGTCTTGGGACCAGAGAAATACTGAGTGAAGAAAATGAAATGCAACCAAACGGAAAAGTTTTCAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008088:ENSGALT00000013126:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.076
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0050123=AMP-binding=PU(3.1=19.0)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]