DreINT0025538 @ danRer10
Intron Retention
Gene
ENSDARG00000010752 | acsl4b
Description
acyl-CoA synthetase long-chain family member 4b [Source:ZFIN;Acc:ZDB-GENE-030131-6493]
Coordinates
chr5:23063558-23066154:-
Coord C1 exon
chr5:23065977-23066154
Coord A exon
chr5:23063668-23065976
Coord C2 exon
chr5:23063558-23063667
Length
2309 bp
Sequences
Splice sites
5' ss Seq
CATGTAATA
5' ss Score
-1.59
3' ss Seq
TACTGTATGTGTGTCTGCAGTGG
3' ss Score
6.63
Exon sequences
Seq C1 exon
CTGGTCTTGGGGAACTACAGCTGGATGAGCTATGAAGCCGTCGACCAAGCAGTGGAGTCTTTTGGCAGCGGTCTGGCAGCTCTGGGTCAAAAGCCACGGCAAACCATTGCCATCTTCTGTGAAACACGGGCAGAATGGATGATCGCAGCGCAGGCCTGCTTCAGACGCAACTACCCAT
Seq A exon
GTAATACCAACACAGCTTCTTCTCTAAACACTGCTCAATCAAGATGAATCAAAACTATCATATACTTGTACATCATTTACAGAAGACACGCACTACTAAAAATCTTGTCAGGCACACTTGGAACAAGAATCGTTTAGAATATTAAATCATTAACTTGCAAACAAACAAACTTGCTTTTTTATTAGTGACTCATTGAATCATTCATTCAGACTGTTTTAGCACTGCATCAAAAACATCATTTAGAAACAAAATAATTGACGAAATAAAAAATCTGTACAAAAAGTGAAAAATAATAACAAAAATGTAGTTCATCTCCTATTATAACTTAAAAATTATGTCATGTAATGTGTGTTTTTATATATCGTATTTATCAAGTATGGCCATACACCCAAAGCGCTTTACAATCACACCACCACCAGTGTACAGCATCCACTTGGATGATGAGACGGCAGCCACAGGACAACAGTGCCTTTTGCTTAGCACACACCAGCTATAGGTGGAGCTGAAAGACAGTGAGCCACTTCGGTGGATGGGAAAGATTGGGAAGTCATGATCAGTAAGGGCCGATGAAGGGAATTTGGCCAGAACACCGGGTTTGCACCCCTACTCTTTACAAGTAGTGCCATGTGATTTTTTTTATTTTTTATTTTTATGACCACAGAGAGTCAGGACCTCGGTTTAGCGTCTCAACTGAAAGACGGTGCTCACTGACAGTATAGTGCAGTAGTTCTCAAATTGGGGGTCGCGAGACAATAAGGGGGGGGGGGGGGTCACTTGGTGATTTACAAGAATCTCATATTTTATTAAACTATTAGAACTATCATATTTTATCCATAACCTGCAGAATATAATAATTTTCATTGGATTGTGACCCCTTGGGGTTATTATGCTAGATTAACATCACAGCAATAGCTTTAGTTGCAGCAGATTGTTTTGGCGTTACAATGTTAAACTATGACACCTTTATGGCACTCGCATACAATAAAAATAAAGGCCATAAATGGACAAGGAGGATGATCTCCAAGTGGCTTCAAGTCTCCAAAATTAAATCAAATTACTGTTGCACTTTTTTGTGTCACCAATAAGCTTGTTTATATAGATCCTATTGGTGTGTGTGCACCATTGTGTGCAATGTTCGCATGCTTATAACCACCTCCGAGCATAGATGGGGTCGCGAGTAACTGGTGTTATTTTAGTGGTCGCAGGCTGAAAATTTTGAGAACCCCTGGTTCAGTGTACCCTTTACTACACTGAGGCATTAGGACCCACACAGACCGCAGGTTGAGCACCCCCTGCTCTCCTCACTAACACCACTTCCAACAACAACCTAGTTTTCTCATGTGGTCTCCCATCCAGATACTGACCAGGCTTAACCCTGCTTCGCTTCAGTAAGTAACTGGTCTTGGGCTGCATGGTGATATGGCTATGGATAAAAAAATATATTGAGCTCAGATTAAAAAAAAAATGTATATGGAATTTAATCAAATTTGCTTTATTAATGTTACTTAATGATAACATTGCTTTTTGTATAATTTCTGTCGTCATCTAGTTCAAGTTAATTTATTTATAGAGCACATTTAACAGCCGCAAGACAGACCAAAGTACAGTACGTAAGAAAAAGTATAATAAAAAATAAGAATATAAAAACTTAAGAATAAGACAAGAGAAACGACAAAAAAAAAACACGTAACAGTACAAAGGACTATTAAAATATTATTAAAAAGCCAAGCTAAAGAGGTACGTTTTATCTACTTTAGTTGTGTTTCAGCATTAGTTAATCAATATAAATATATTATTCTTTAAATATTGTATATATTGTTTTTGCATTAGCTTTAAGATTTCACTTTTTTCACAATTGTAGTTTTTGTCAAGTACTTTAGTATTTTTATTACTTCTTGTTTCTTCTGTTTCAATAAAAATAAGAATATTAATTTTAATTGGAAAACACAATTCAAACATGAAATGCAGCTCAAAGTGCTTCACAAGCATGAACCAAATATCACGGCAAGGCAAGTTTACTCATACAGCACATTTCAGACACAATAGTAATTCAAAGGGCTTTTCTGGAACAAAAACAAAAGAAACATCAAGTATAAGAAATAAAAACAACAACAACGAATAATAAAATTGATTAAAAATGGATTGCAAAATGTGCTAAAACAGGTTTAAAGGAATGAAAGAACAACATCAAAGTCCATTTTACTCTATTAAGTTTTTAGATCAACGTAAATAATGTATCATCAAACAAAGCCATTCTTTATAAAGTATCACAATGTCAGCAACCATCAATACTGTATGTGTGTCTGCAG
Seq C2 exon
TGGTGACTCTGTATGCGACTCTGGGTGAAGATGCTGTTGCTTATGGGCTCAATCAATGTGGCGCCACTCATCTCATCACCAGCACAGAACTGCTGCAAAGCAAACTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000010752:ENSDART00000002453:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(12.4=100)
A:
NA
C2:
PF0050123=AMP-binding=FE(16.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]