DreINT0025692 @ danRer10
Intron Retention
Gene
ENSDARG00000007219 | actn1
Description
actinin, alpha 1 [Source:ZFIN;Acc:ZDB-GENE-081113-4]
Coordinates
chr13:36221081-36223874:-
Coord C1 exon
chr13:36223793-36223874
Coord A exon
chr13:36221167-36223792
Coord C2 exon
chr13:36221081-36221166
Length
2626 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
GCCCCCTTCTTTCTCTGCAGATA
3' ss Score
13.27
Exon sequences
Seq C1 exon
GACGACCCCATGACGAATCTGAACACGGCCTTCGATGTTGCTGAGAAGTATCTGGACATCCCGAAGATGCTGGACGCAGAAG
Seq A exon
GTGAGACATTTAGAGGACAGGCTACTTTCTGTTCCACCTTCACTGTGAAACTAGGTTAGGTGAAACTCGGTCTAAATATAGAGATGTAGGAGGAACGCAGGTATGTGTGTGTGTGTATGCTGAATTACACCCCATTACTGAAAGCTTCTTCAACATGTTTGGAGGGGTTTTAAGGTTTTAAGGTAGTAGGCGTCATGATGAGGTTGTTGCAGGGCTCGTACGTGGCTGATATTATTAAAGTATTCAGCTGGTTAAGGCTTGTTTTAAAGTCTAAAGGTATGAAATGTATAAGATATACAGTTGAGGTCAAAATTATTCACCTCCCTGATTTCTATTTTCTTATTCAAATATTTCCCAAATTATGTGTAACTGAGCAAGGACATTTTCACAGTATGTCCTATAATATTTTTTCTTCCAGAAAAAGTCTTATTTGTTTTATTTCGACTAGAATAAAAGCACCTTTTTATTTTTTAAGAGTCGTTTTAAGGTCTACATTATTAGCCCCCTTAAGCTATATATTTTTTCGTATATATATTTAACCTGCCTAGTTAACCTTATAAACCTATTTAAGCCTTTAAATGTCACTTCCTGAATACTGGTTTCTTGAAAATATCTAGTAAAATATTATTTACTATCATCATGGCAAAGATAAAAGAAATCAGTTATTAGAAATGAGTTTGAACACAAGCCAATGCAAACTATTAGATTTTAGTTTACTCCAAGCAAAGCATGTTATTCCTTTAAATTGGAAAAAAACTTAAAGGCCATCCTGTGGCCAGTGGATTAAAGAAATGACTAGTAATTTTGCAAACACTGTTAAAGGGAAATTACAAGATTTGTTATAAAATATGGACCCCCTTTAATCTCTTTTTGAACCAGATGGACAACGCAACATTTTTTGATGTTTTAGCTTTGAAACCCTTGTTGGTGTCTTCTTGTATTGTTCAGATGTCTTACATTTCAGCACCAATTAACAAATTTGTTTAACCAGTGACACTGGAAAGCTGGGAAACAAAGATACAAAAATGCACTGAACATTATTATTTATAAATTTTTTTAATGATGTACTGTTACTATTTGAATTTATGTAATTTATTTACATATTTATGTTCACATTTTTAACCATTTGTCTTTTCACTTTTTATTTTTATTTATTTATTTATTATGCATTTTGTTCTTTAGAATAAGCAAAACCTAATACATTTATATTTTGGGGAAAAATGAGTTATTAGAACTGTTATGTTTAGAAATGTGTTGAAAAAAATTCAGAAATTTAGGAAAATAATATGCAGCCGGGCTAATAATTCAGGAGGGCTAATAATTCTGACTCCAACTGTATATATATATATATATATATATATATATATATATCGATAATAAGACATGTAAGATATAATGAAATCATTTCAGTTGTGGGGGCAGTTGATTTAGAAAATCTTTTATAGAACATTTATTATGCGAGATGATAAATACTTTTGTTTTTTTTTTTTTTGTTTTTTTTTCCCACAATTTTTATTTTATTTATATTTATATTTAAACATGGGAAGCTTGACTTGTTGGTTTTTATTTCACCAATGGTTAGAAAATAATAGACCTTATTCCTGAAAAAAAAAACTATTACAGTTAGAATTATTTCCTAAAAAATCAATATGCATATATTTTTAGATAAATTTTAATGTAGAATACAAATTAAATATGGGTCACATTATAAATCAAAACTCACCACATGAGTTTGTTAGCTCATATTGCTGTTTTTTTTGGTGAACAATTAATCTGTGCATGTCAACAAAATTAGTTTGCTCTTCTACTCTTTAATTGAAATATGAAAATGCACTTCCTGTTTTTTTCTTCAGTAAAGTTGTCTGATCACGTATATCTTAGGAATTATGCATGGCTAACATATTTAATCACGCTGCTCCAACTGTCAGTTTTAACAGCAAACAGGTGAGCAGGAGGTGTCTGTTAGGTTGTAATAATTCTCCCCAAACACTTTTCCTGATCGTTCTGAAGGAATTGCCTACTTTACTACATTCATTCAGCTCACAGTAGAAAAATTAAGCCAAGCCCAATGTCTGGCTTAAGATTCCGTTTCTCTAGGAACTGCGTCACATTACGGAAAAAATAACTGTCGCAGCTTCCGGTTCATGGGGACTTTAATGTATGAACAAATTAGTCTGTGTTAAACTTTTATTGTTTTGATGGTTGACATTTTAAAATATATTGTATTTATTATAATATAAAAATGAATATTATATGTTTTTAAAATATAATTACAATTTTTATTATAAAACTAAAATTGAGGACAATAATGCATCTCAGCAAGCTTTATCAAAATAAGAAATGTGTCAAGTGGCTAAAATTAAACATTTTATTTACACACAAGGTCAAAAACTTAACTTGCCCATCATTTGAGTGCTAATTTATGTTGCTCAAAAGCACTGGTATTTGTTTGATATTTTGTTGATAGTTTCATTGCAGGTTGACATTACTATGTCATATCTTCATGCACGAACAACTCTTTCTTTACACAGGAAGTCACCTCAGATGGACCTCTGAAGTAGTGTGTGACTCTGATTATTCATTTATTCTCTCATTACGTTAATATGGCCCCCTTCTTTCTCTGCAG
Seq C2 exon
ATATTGTTGGTACGGCCCGTCCCGATGAGAAGGCCATCATGACCTACGTTTCTAGCTTCTACCATGCCTTCTCCGGGGCGCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000007219:ENSDART00000140243:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0030726=CH=FE(26.0=100)
A:
NA
C2:
PF0030726=CH=PD(23.1=82.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]