MmuINT0010423 @ mm10
Intron Retention
Gene
ENSMUSG00000015143 | Actn1
Description
actinin, alpha 1 [Source:MGI Symbol;Acc:MGI:2137706]
Coordinates
chr12:80192368-80193717:-
Coord C1 exon
chr12:80193636-80193717
Coord A exon
chr12:80192454-80193635
Coord C2 exon
chr12:80192368-80192453
Length
1182 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
CTTTCTCTGTCTCTCTACAGACA
3' ss Score
13.12
Exon sequences
Seq C1 exon
GATGATCCACTCACAAACCTGAACACGGCCTTTGATGTGGCAGAGAGGTTCCTGGACATCCCTAAGATGCTGGATGCTGAAG
Seq A exon
GTAAGGGCTTTCTTCACCCTCCCCCACCCCAGCCCCCAGCAGCTGAGGCATGAAAGGAGTGGGTCTGTCCACTGGGACCTCAGTTTGAAGAGCTTGGGATCCCTCCCCTGCCGGGGATTCTGTGTGGTTCGGAGGAAGAGGCACTAGCTGACAGCACGCAAGCAGCATAGAGCAAGTTTTTCTGGAGAAGGGAAGGTAGGCCTTCCTGCTCTATCCTTGCCCTTGGAAGAAGCAGGAACCATGGCCACTATCCCTTAAGCTCTCCTTAGTCCTAATGTTCATGTGCCTTTTACGTGTCTTAGCCTCACAGTGAGGAGCTGAAGAGAGTCTAGGGTGGGCAGTGTTGGCAGGGGGATTGTCCAAGATTGCCCCCAGCTCTGTTCTCCTGATAACCCTTTATATTTGACAATTTCTTCAAGAAGATTCCAAACATGAACGGAAGCATACGATGGTATAACACCTACCGTCCCAGGAGGACTTTTGACATTCCATCACACCTTTTTTTTTTTTCCTGTGTCCTTTTGCTGTCTTTGTTGGACTGTGCTGAATCTCAAACCTCATGTCACCGCTACCTGCTTCCGAGTACATGCCTTAAAGATAATGGGTATTTTTGAATGTAATTAAAATACTTTCTACAGACCAGTTGTAGTGACATGTACCTGTAATCTCAGCACTCCAGGGTTGAGACAGGAGGATCATGAATCTGAGGCCAACCTGGGTTCTATCAGTGAGACTGTCTCAAAAACAAATCAACAAAAACTGTTTCACACCTAGCAAATATGACAGTGATTCCAATATATTCTTGTCATGTCATGTGCATGACCAGAGTCCCCTAGTTTAAAATGGCCACTGAGGGTGGGTTGGCTGTGCCCGTGCATATTCTTAGGTGGTGAGCTCTATAGGCCACATTCTCCTTCCTTTAACCCCATCTATTGATGCCCTTAACCTTGTGATTAGAGGAGAGCTGCCAGGTAGGGTAGCCTTGGTTGCCTCCTGGGGTATCAGATCATCCATGCCTCTGTGACCCATGTTCCCGTTACTGGAAGTTGACTCTGAAAGCTGGCTAGATTCAGGGTGGACCTTCTGGCAAGGTCACTTCACAGTATGCCACACCCCTTGAGAGATGTGCTATGTGCTCACTAAGGTAGCTTTAACTGCAGCTCTTTCTCTGTCTCTCTACAG
Seq C2 exon
ACATCGTCGGAACTGCCCGGCCAGATGAGAAAGCCATTATGACTTATGTGTCTAGCTTCTATCATGCCTTCTCTGGAGCCCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015143:ENSMUST00000021554:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0030726=CH=FE(26.0=100)
A:
NA
C2:
PF0030726=CH=PD(23.1=82.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types