RnoINT0012603 @ rn6
Intron Retention
Gene
ENSRNOG00000056756 | Actn1
Description
actinin, alpha 1 [Source:RGD Symbol;Acc:70907]
Coordinates
chr6:103401041-103402377:-
Coord C1 exon
chr6:103402296-103402377
Coord A exon
chr6:103401127-103402295
Coord C2 exon
chr6:103401041-103401126
Length
1169 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
CTTTCTCTGTCTCTCTATAGACA
3' ss Score
12.16
Exon sequences
Seq C1 exon
GATGATCCACTCACAAACCTGAACACAGCCTTTGATGTGGCAGAGAGATACCTGGACATTCCAAAGATGCTGGATGCAGAAG
Seq A exon
GTAAGGGCTTTCTTCACCGGCCCACACCTCACCCTCCCCCTGCCCCCCCAGCAGCCAAGGCACGAAGGGAGTGAGTGGGTCTGTCTTCCTGGACAAGCTCAGCTTAAAGAGCTTGGATCACTTGCCTGCCAGGGCTTCCGTGTGGGTCAGAGGAAGAGGCACTGGCTGATAGCACACAAACAGCAGAGAGCAATCTTTTGGAGAGGGGAAGGTAGACCTTCCTGCTCTGCCCTTGCCTTTGGAAGAAGCAGGCACCACGGCCACTGTCCCTTGGGCTCTTCTTGATCCTAATGCTCATGTGCCTTTTACAGTGCCTTAGCCCCACATAGAGGAGCTGAAGAGAGTCTAGTTGGGGCAGGGGAATTGTCCAAGATTGCCCCCTGATAACCCTTTAGATCTGAAAATTTCTTCAAGATGATTCCAAGCATGAACAGAAGCATATGCTGGTCTAACACCCACCATTCATTCCAGAAGGGTTTTTGACATTCCATCACACCTTTTTTTTTCTCTGTGTCCTTTTGCTGTCTTTCTTGGACTGTATTAAATCTCAAATCTCATGTCACTGCCACCTCCTTCCAAGTACATGCCTTAAAGATAACGGGTATTTTTGCATGTAACTAAAATACTTTCCAGGGACCAGATGTGCTGACATGTGCCTATAGTCTCAGCACTCAGGCTGAGACAGGAGGATCGTGAATCTGGGGCCAACCTGGGTTCTATAAATGAGACTGTTTCAAAAACAAAAATAGTTTCACATCTAGCAAACATGACAGTGATTCCATTATATCTCTTGTCATGTGCATGACCAGAGTCCCGTAGTTTAAAATGGCCACTGAGGGTGGGTTGGCTGTGCCCATGCATGTACTTGGGTGGTGAACTCTATAGGTCACTTCCTCCTTCCTTTGACCCCTTCTATTGATGCTACTGACGTTGTAATTGGAGGAGGACTGCCAGGTAAGGTAGTCTTTGCTAGCCCTCTGGGATATCACATCACCCATACCTCTGTGACCCAAGTTCCTGTTACTGGAAGTTGACTCTGAAGGCTGGCTAGATTCAGGACAGACCAAGTGGCAAGGTCACTTCATAGTGTGCCAGCTTCTGCATCCCCTTGAGAGATGTGTGCTTACGAGGTAGCTCTTAACTGCAACTCTTTCTCTGTCTCTCTATAG
Seq C2 exon
ACATCGTCGGAACTGCCCGGCCAGATGAGAAAGCCATTATGACCTATGTGTCTAGCTTCTACCATGCCTTCTCTGGAGCCCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056756:ENSRNOT00000079824:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0030726=CH=FE(26.0=100)
A:
NA
C2:
PF0030726=CH=PD(23.1=82.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]