DreINT0027345 @ danRer10
Intron Retention
Gene
ENSDARG00000091726 | aebp1
Description
AE binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-030131-2390]
Coordinates
chr10:2801949-2804570:+
Coord C1 exon
chr10:2801949-2802145
Coord A exon
chr10:2802146-2804396
Coord C2 exon
chr10:2804397-2804570
Length
2251 bp
Sequences
Splice sites
5' ss Seq
ATGGTACGA
5' ss Score
7.82
3' ss Seq
GATTTTATCTGGTTGTTCAGGGA
3' ss Score
5.63
Exon sequences
Seq C1 exon
GTGAACCAGAATTCAGGTACACGGCAGGGCTTCATGGGAACGAGGTGCTGGGCCGGGAGCTTCTGCTGCTCCTCATGCAGTTCATCTGCAAAGAATACAATGACGACAACCCGAGAGTGCACCGCCTGGTGGAAACGGTGCGAATTCATCTGGTGCCATCGCTAAACCCTGACGCCTATGAGCTGGCATACGAGATG
Seq A exon
GTACGACAAACTTTCAGACCAATAATACCAACTAAGGCTCAGTGGAAATACATGTTCAGCCTACATTTTTGCGAAACGTGTTGCTCCAGATTATTGCACATTTCAGATGACAAATCCACTAGAGGGCGCTACATTTTTGCGTAATCTGACGAACTTTAATTAGGGTACGTTTTGTTGTACACTGCATAAAACGCTGGGTTCCACTCAACTCTTACATGCTGTCCCATCACAAATCAGTCAAGTTAACATCATTGTTTTATGTTCAATCGATTGAGTTGTCGCCAAAAAGCCTTAAGCAGTTGCTTCAAATTATTTTTAAAAAGTAGTTTAAACAAGCAGTAATTTTTTTGATTGTGCATTTTAGATAAACATCCTTCATGTACACAGCCATGAGAAGGCGTAGCTTGTTGTAGAGATCAGTTAGCGACAACACAGGCTCATTGTGGAAACGTAGTCCCGCGGACGTTTCTGGAGACTGCGGAATACGTCCCGGCGGGTACGTACAGCTGCAGTTTTTGTTTTCGCGAATCCGCGAGTGCAGTTCGCGCCCGCGCTGTTCTCGCGTGAATCCACCAGAGGCTTCTGTCCGACTGACCGGATGATTGACTGCACGACTGGCCAATCGGCTGACCCGTCCTCCTCCTTCCCTGAATCCAACCAATTTTACCGATTGACCCGCCCGCCCGCTCGTTTTCTTAAATGCGAGCAACAGTTTACAAAAGCAGTCCAAAAAAAGAAAAGCCCTGATTTTATTTTTTTTTCTACCGCGTTTTCGGATTTCACCGCGTTCTCACCCTGTTACGAAACTCGTTCACTTAATTTTTGGGATTCTGTTTTTGTCTTACCTGATTGCTGGAACCGCTCTTCCCCGGACTCGAAACCGATCGCCATGGTCAACTCCTCTCTGCATCTCGAGCCTGCCGACGTACACGGTGAGCTGAGTGGACAAACGGGTTGCAGCGGGGAAGCCCTCCACAAGGAGGTAAGCGGTCGGCCGGTCGGCCGGCAAGAGCGAAAGGGAACAGCGTCACACCGCCCCGCAGCGTTCGCTTGAAAAAAATAAATGCAGCCGTACGTACCTCCCGGGACGTATTCCGCTGTCTCCAGAAACATCCGCGGGACTACGTTTTCAGAATGAGTTTGGGTTGGTTAGCGAACCACTCACCTAAACCCAACCAATAATGTTTCCAAAAATAAACATAAGAGAAAAGTGCCCTTCCAGCTGCAACCCATCACTGGGAAACACCCATACACTCTCATTCAAACCAGCGACTTCTTAATGTGAGGCGGCAGCACTACCTACTGCGCCACCTCGTCACCCCATGTCAACAATATGTACTTGTAAATGTCATTAATGTGAATAGAAACAACAAAATTTGTCGTCACACTGCCCCCTAGTGTTCACTTTATTTAGAAACTGCAGTTAAACTAATTTTAAGTATGTTTTTTGCATGTTTACAAAAATATAGGCTGTAGTAATGGGAAGTTCAGATCTTTTTACAGAGTTTTTTCAAGTAATTTCGTTAAATTTGACAAAATATTATTAAAATGTCACGAGTTGCTTCAAAACACATCAACAACTAGCCCAAACATTGATCACACAACAAACAGCTCATAACTAGAATGCTATAAGAAAGATAAAATAATCATTGAATGTTTACCTGGATATTTTGTCTGTCTCAGCTCTTCAGATGAGTCTTCAAGTTTGAGTCGTTTGTTTAAGTGACACACACAGTCCCGTATAAGCTTAACCAATGCACACTGTCCAAACCAGAAGGATTTGTTCACCTTTCCAGTCTTCGAGTTTTTGAGTCGCTCGTTCATCGCGTAAAGAGAAGAATGACTCAGGATCAAATCTTTTTCTGGCTCTGACTGCATGTTTCCCAGTACTGGGTTGCAGCTGGAAGGGAATTCACTGCATCAAACATATTCTGGATAAGTTGGCGGTTCATTACGCTGTGGCGACCCCAGATTAATAAAGGGACTAAGCCGAAAAGAAAATGAATGAATGACTGCATATGATTGGGTCATGTCTTTCACATGTGAACGAACCATGCGCGAATGAACAAATCACTCTCTCTGATGACTGATCATTCCTGAGTCACATTAAAGATTCATTCAAAATGAATTAATCAATCAAGAAAAACTGAATAGAAGCAGGTATTTCCAGTGAGTCTCTGTTGAATAATCCGTTCTCTATTCTGTTTCATCGCCTGATTCATAATTGATCTGATTTTATCTGGTTGTTCAG
Seq C2 exon
GGATCTGAGATGGGAAACTGGGCTTTGGGACACTGGACAGAGGAGGGGTACGACATTTTCCAGAATTTCCCAGACCTGAACAGTGTTCTGTGGGGTGCGGAGGACAGAGGATGGGTGCCGCGGATCGTTCCCAATCACCACATTCCCATCCCTGAGAACTTTCTCAATGGCTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000091726:ENSDART00000131435:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.091 A=NA C2=0.017
Domain overlap (PFAM):
C1:
PF0024619=Peptidase_M14=FE(19.3=100)
A:
NA
C2:
PF0024619=Peptidase_M14=FE(17.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]