HsaINT0005055 @ hg19
Intron Retention
Gene
ENSG00000106624 | AEBP1
Description
AE binding protein 1 [Source:HGNC Symbol;Acc:303]
Coordinates
chr7:44151453-44151920:+
Coord C1 exon
chr7:44151453-44151649
Coord A exon
chr7:44151650-44151740
Coord C2 exon
chr7:44151741-44151920
Length
91 bp
Sequences
Splice sites
5' ss Seq
ATGGTGGGT
5' ss Score
6.18
3' ss Seq
ACCCTGCTGGCTCCCCACAGGGC
3' ss Score
10.72
Exon sequences
Seq C1 exon
GGGAGCCCGAGTTCCGCTACACTGCTGGGATCCATGGCAACGAGGTGCTGGGCCGAGAGCTGTTGCTGCTGCTCATGCAGTACCTGTGCCGAGAGTACCGCGATGGGAACCCACGTGTGCGCAGCCTGGTGCAGGACACACGCATCCACCTGGTGCCCTCACTGAACCCTGATGGCTACGAGGTGGCAGCGCAGATG
Seq A exon
GTGGGTTGAAGGGTGAGGCTGGCCAGGGTCCAGGCAGCTGGGGGTTGTGGGGGTGTGGGTAGCCGATGCCTACCCTGCTGGCTCCCCACAG
Seq C2 exon
GGCTCAGAGTTTGGGAACTGGGCGCTGGGACTGTGGACTGAGGAGGGCTTTGACATCTTTGAAGATTTCCCGGATCTCAACTCTGTGCTCTGGGGAGCTGAGGAGAGGAAATGGGTCCCCTACCGGGTCCCCAACAATAACTTGCCCATCCCTGAACGCTACCTTTCGCCAGATGCCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000106624-AEBP1:NM_001129:16
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.030 A=NA C2=0.017
Domain overlap (PFAM):
C1:
PF0024619=Peptidase_M14=FE(19.9=100)
A:
NA
C2:
PF0024619=Peptidase_M14=FE(18.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTACCTGTGCCGAGAGTACC
R:
TCAAAGCCCTCCTCAGTCCAC
Band lengths:
172-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)