RnoINT0014654 @ rn6
Intron Retention
Gene
ENSRNOG00000013720 | Aebp1
Description
AE binding protein 1 [Source:RGD Symbol;Acc:1306922]
Coordinates
chr14:86108676-86109134:+
Coord C1 exon
chr14:86108676-86108872
Coord A exon
chr14:86108873-86108954
Coord C2 exon
chr14:86108955-86109134
Length
82 bp
Sequences
Splice sites
5' ss Seq
ATGGTGCGT
5' ss Score
8.27
3' ss Seq
TCCCATGGCTTTTCTTGCAGGGC
3' ss Score
9.86
Exon sequences
Seq C1 exon
GGGAGCCTGAGTTCCGCTACACAGCCGGCATGCACGGCAATGAGGTGCTGGGCCGAGAGCTGCTGTTACTGCTCATGCAGTACCTGTGTCACGAGTACCGGGATGGGAACCCCAGAGTGCGTAACCTGGTGCAGGACACGCGCATCCACCTGGTGCCTTCGCTGAACCCTGACGGCTACGAGGTGGCAGCGCAGATG
Seq A exon
GTGCGTTGTGGGGCTGGTGAGGGGTGGGTAGAGATCGGAGGCATGGGCTCCCTGACTTCCCATCCCATGGCTTTTCTTGCAG
Seq C2 exon
GGCTCAGAGTTTGGGAACTGGGCACTGGGGCTGTGGACTGAGGAGGGCTTTGACATCTTCGAGGATTTCCCAGATCTCAACTCTGTGCTCTGGGCAGCTGAGGAGAAGAAATGGGTCCCCTACAGGGTCCCGAACAATAACTTGCCAATCCCTGAACGTTACCTGTCCCCAGATGCCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013720:ENSRNOT00000018846:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.061 A=NA C2=0.017
Domain overlap (PFAM):
C1:
PF0024619=Peptidase_M14=FE(19.9=100)
A:
NA
C2:
PF0024619=Peptidase_M14=FE(18.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGCTGTTACTGCTCATGC
R:
CAGTGCCCAGTTCCCAAACTC
Band lengths:
167-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]