DreINT0029539 @ danRer10
Intron Retention
Gene
ENSDARG00000105035 | anapc2
Description
anaphase promoting complex subunit 2 [Source:ZFIN;Acc:ZDB-GENE-081104-256]
Coordinates
chr5:53929511-53930009:+
Coord C1 exon
chr5:53929511-53929714
Coord A exon
chr5:53929715-53929876
Coord C2 exon
chr5:53929877-53930009
Length
162 bp
Sequences
Splice sites
5' ss Seq
AAGGTATTT
5' ss Score
7.64
3' ss Seq
TTTCTTATTTTTTTATGCAGGCC
3' ss Score
9.46
Exon sequences
Seq C1 exon
GATGTGGCAGACTCTAGGCGGATCAACTCTAATATCCACGAGGAGGAACGTCGTCTTCCTGCAGAAGAGCAGCCTACATTACCACTGTCTGCCATGATCATTTCATCTGAGTTCTGGCCCCAGCTGAAGGAGGAGAAGATGGAACTCCCTGCAGTCGCCTCTAAAGCCATGGAGGACTACACACACCGCTTTGAGAAACTCAAG
Seq A exon
GTATTTTAGTACATTTTTTGCTTTTTGGCACATATATTATTGGCACACAGCACAGAAAGAGTTTGGTCAAATTCTTTAGATTCTTTCTTCATGATCTGTCTTTGTCTTCCAAACTCTTTTGGAAATATTTTAAGCCATATCTTTTCTTATTTTTTTATGCAG
Seq C2 exon
GCCATGAGAACTCTGAGGTGGAAACCTCAGCTGGGTTCTGTTACATTAGATCTAGAGCTGGAGGACAGAACTATCACAGATCTCACAGTGTCGCCCATCCATGCTGCAATTATTTTACACTTCCAGGACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000105035:ENSDART00000171159:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.206 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0088817=Cullin=FE(11.9=100)
A:
NA
C2:
PF0088817=Cullin=FE(7.8=100),PF0454511=Sigma70_r4=PU(36.8=31.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACGTCGTCTTCCTGCAGAA
R:
GGCGACACTGTGAGATCTGTG
Band lengths:
254-416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]