GgaINT0126152 @ galGal3
Intron Retention
Gene
ENSGALG00000008625 | F1NLT0_CHICK
Description
NA
Coordinates
chr17:2193513-2194479:+
Coord C1 exon
chr17:2193513-2193716
Coord A exon
chr17:2193717-2194349
Coord C2 exon
chr17:2194350-2194479
Length
633 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
CTGCTGCTTCCCTCTTCCAGGCC
3' ss Score
12.2
Exon sequences
Seq C1 exon
GACATGGCTGACTCGCGACGCATCAACGCCAACATTCGTGATGAGGAGGAAAAGCTCCCGGAGGAGGAGAGGCCGCCGTTCAGCCTCGTGGCCGTTATCCTGTCCAGTGAGTTCTGGCCACCGCTGAAGGAGGAGAAGCTGGAGCTTCCAGAGCAGGTGAAGGAAGCCATGGAAGCCTATTCCAAGAAGTATGAGAAATTGAAG
Seq A exon
GTGAGGATTCCTTAACCCTCCGTAAGAGTTCTGTAGCTCTGCTATGTAGCATGAGCTTGCTTGGTTGTTGCGGAGTCCCTGCAACATCCCTTGCAGCATAGCTGCTGCTACACCCACGGTGTTACAGTGGAATACCAAAGTCCTCCAGCTTTGAAAGTGGATTAGAAGCTACACCAGCTTAGCTACTGCCAGAAGAATGAATAATAGAATCATTACAGTGCAAAAGACCACAAAGATCATCATGTCCAACCATCAGCCCATCCCACCATGCCCACTGACCACGTCCCCAATGGCCACATCTCTGTGGTTCTGGAGCACCTCCAGGGATGGTGACCGCACCACTCCCTGTGCAGCTGTGCCAGTGCATGTCCTGTCCATGTCGGGCCTCTTTACTTCAGTACTGTCACTCTTCTGGTTGTTCTCTTGAGGAGAGGCTTTCAGGCAGGAGAGTAGCACTGGTATTGGGCAAGGGCTGGGCAACAACTTATGTCAAGGGTGAGGGAGCAGGGAATGGATAATGGTGGGACAGAGATTCATGAGGTGGGAGCAGCCTTTGTCTTTGCTGGAGGTGGACAGAGTTCAACCAGCCGTAGCGACAGAGGGGCTGGAAGATCTGCTGCTTCCCTCTTCCAG
Seq C2 exon
GCCATGAGGACCCTGAACTGGAAGTACCACCTGGGGCTGGTCAGCCTGGATGTGGAGCTGGCCGACCGCACGCTCTCCCTGTCCGTGTCCCCTGTGCACGCTGCCATCATCCTGCACTTCCAGACCAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008625:ENSGALT00000014053:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.147 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0088817=Cullin=FE(26.6=100)
A:
NA
C2:
PF0088817=Cullin=FE(17.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACATGGCTGACTCGCGAC
R:
TCTTGGTCTGGAAGTGCAGGA
Band lengths:
334-967
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]