HsaINT0007883 @ hg19
Intron Retention
Gene
ENSG00000176248 | ANAPC2
Description
anaphase promoting complex subunit 2 [Source:HGNC Symbol;Acc:19989]
Coordinates
chr9:140070160-140074836:-
Coord C1 exon
chr9:140074633-140074836
Coord A exon
chr9:140070290-140074632
Coord C2 exon
chr9:140070160-140070289
Length
4343 bp
Sequences
Splice sites
5' ss Seq
AAGGTACCT
5' ss Score
8.49
3' ss Seq
CTGACCCTGGCCCTCCTTAGGCC
3' ss Score
8.14
Exon sequences
Seq C1 exon
GACATGGCGGACTCCCGCCGCATCAATGCCAACATCCGGGAGGAGGATGAGAAGCGGCCAGCAGAGGAGCAGCCACCGTTCGGGGTCTACGCTGTCATCCTGTCCAGTGAGTTCTGGCCGCCCTTCAAGGACGAGAAGCTGGAGGTCCCCGAGGATATCAGGGCAGCCCTGGAGGCTTACTGCAAGAAGTATGAGCAGCTCAAG
Seq A exon
GTACCTCCATGCCAGGCCACCCCATGGGCTCTTGGCACCCCTACCCTGCACTGCGGGGCTCCCAGCAGCCTGGTGCCTGTGGCTGCCCCGTTGTCACCCGAGTGTCTCTGGGTTGGTCCTGTCTCGCAGCCGCCTCTGCAGGAGAGGGAGTGGGCCTGGCCCACGCTCTCTCCGCCTTCCTCCCAGCAACCCCGTGTCCCCTGTGAGCGAGCGTCCGCGCGGCCCACAGGCGCTTGGGTGGGCTGTGCTGGGCCCAGGTCTCCTGAACTGCTTCAGGGGGACCCCTGTGGCCACAGCAGGCCCTGCCCTCTGAGCGTTTCCTCCTCTTTTGCTATCCACCCTCTGCCTCTCAGAACCGGGGCTTGGGGTGCCTTGCGTCACTGCAGGGAGGCAGCTAGGGAGCCAGGGCTGCCCTCTGCCCAGGGCAGCACTCCCAGGCGCACCTGACCCCCAGGACCCCAGCCCTGCCCCCTTCTCCAGGTCTGTTTCCTCGAGAACTGCCTTTGCAGGCTCCAGTGGTACTTGAGGACCGGGGCTATGGGTCTGTGGTGGGAGTAGGAGGGGAGCAGATGTGGGGAGTGGAGGAGTGAGCCCTGGCCTGGAGGTCACTGGCAGATGGGGACAGTGTGCCCAGAGGATGGTATTGGCCACGTTTGGCTCACTTCCCCTGGCAGCACTGCTGAGATCCCAGCAGTCCCAGTACAGGCGTCCAGAGCCTGAGGGATGGAACTAGGCTTGGCGGTTCTTTCCCTGAGCTCATAGTCAGGTGGGAGGTGTCAGCTCGGGGAGGAAGGGTTAGGATGGTCGTCACAGGTGGGAGGTGTCGGCTCGGGGAGGAAGGGGTCGGGATGGTCGTCACAGGCGGGTTCCAGGGCTTTCTGTCTGATGTGTGGGGCCTGTGAGGCCTCCAGTGTGCCCAGCGAGTGCTCAGGACTGGGGGGAGGCGGGCACCCCAGCGGGGGACATGTGAGGAGAGGGTTCTGGGGCACAGCCAGCATCCAGTCTGCAGACCCCAACCCCAGGTACCCCAGGAAGGGGATGGTCCAGCCTCGGCCCAGGCAGGAGGAGCAGCCTCAGGACAGAGCCGCCAGGAGGCCGGCGGGCGGGCGGGGCTGAGTTCAAGGGAGGGTCCACAGCTTCTCCAGGTCTGCTGTGAAGGAGGCTGGACCTAGATGTGTTTTCCTTTTTCTTTTGCAAGTAAGAGGGCCTTGCTGTGTTGACAAACCAAGGGAACTTACTCCTAGGGGAGGGCAGGGCGATGTGTCCACTTTAGAAACCAAGGGGGAAGCTTCCTTCCGGAGACAGACAAGGGGAGGGCCAGGCGGAGGCCCCCAGGGCAGGAGGCCAAGGGGCTGTGGTAGGGCCGGGCTGCTGACCATGGTGGCGAATGCCTGCTGCCTCCCTCCAGGCCTCAGCTTGGCTCTGGAAGAGTCCAGGTGTCCCTTGCAGCTTGTGGAGGGTCTGTGTGGCTTGCACCTGCTCTCGGTGGAAAGGAGCACCCTGGCCATCCCCACACCTCGAGCTCTGGCCTGTGATACAGCCTGGTGTCTCTGGAGCCTGCGGGCACCGTGCCCCGCTGTGTTCTGGTACAAATCATCCGTGTGGCCCGGCTCCGTGCTCGGTCCCTTTCCCCCTGCCCCTCTGGCTGCCTCAGGCTCTCCAGCGTTGCTTCCAGGCAAGGCCCCAATGGCCTCCCTCCAGGGTCCTGCCTTGGGTCCCAGGCATGACTCAGCCACTTCCTGTTGCTCAGGCCTGATGTGCTGGGACAGCCACACTCTAGTGCCCTTTGTCTTAACTTCAGTGGGACACAGGAGTGGCTCAGGGAGGCCCCGGGGCTGTGCTGAGAGGTCCCACCAGCAGAGCTCCTGGCCGAGCGACCTTGTTGGACACGTGGCTGGCCATGCAGCCCACAGCGTCACCCCTGAGCCCTTGCATGTGTCCTGCGGCAGGCTGACCAGTGGCGGCGTTTGTGGAGGTCATGGCCTTGGAGCCAGAACTAGGACCTAGCAAGCCACTGACTCCACTTCCATTTTCTGTCCATAAAGAGGGGTTTGTTTCCATTAGAAGCTGCCGGATCCTGGAAGGACTCAGGAGCCCTTGGCCCACAGAGCAGGTGTGTCAGTGCCCCAGTGCTACCAGAACAAAGTACCACAAACCAGCGGGCTTAAAAGAAACATATCATTTTACAGAAGTCAGAAGTCTAAAGTCAGGGTCAGCAGGGCCCTCCGAAGGCTCTAGGGGAGGCTGCTTCCTCCCCTCTTCCAGCTTCTGGGGGCTCCAGGAGCTCCGGGGCCTGTGGGTGCCTCGCTCTGGTCTCTGCCGCGTCGCCCGTGATGTTCCCCCGTGTCTCTGTTCCTATCTCCCTCTTAGAAGAACACTCTCTCTATTCCAGGGTGACGTCATCTTAATTATATCTTTAATGACCGTATTTCCAAATAAGATCTCATCAGAGGCACCGGGAGTTAGGGGTTCATGTGTCATTTTTCGAGGGGCACAATTCAGTGCATGACAATTTGCCCCATGGTGGGCCCCTCCCACGTGCAAGTGACAGCCCCAGTGTCCCCAAAAGTCTTCACCATTTCAGCATCAACTCCAAGTCCAAAATCTCATCTAACTACCATCCACACAAAGTTCCACACACATCTCAGCCTGTAAATGCATCTTAACGAGGTCCAGGTGAGGCTGGAGTGTGCGCCATTCCTCTACGTAAATAGATCTAAACAAGGTACAGGTGAGGCTGGAGTGCGCGCCATTCCTCCAGCTGGGACGCCGTGAAATCAGCCAACAGATGATCTGTTTCAAAAGTTCAGCCGTAAGACAAGCATACACATTCCCACCCCAAAAGGGAAAACTGGGAGGAAAAAGGACAGCGAGTCCAAACCCAGCAGCCGAAATTCCACTTGACTTCCAGGCCTGCGAATCCTCTTTGGCCCCCTGCTCCGTCAGCCTTGGCCTCGGCGGCTCTGCTCTTGGAGCCTGCCTTCCTTTCACTCCAGCCTGGCAGCACTTCTGCGGGTGTAAAATTCTCACACCTTGTTGGCTTATGCAGCTCACCAGTGCCGAAGCCTTCAGACAGGCGGGTCCGCAGCCCTTTCCCGGAGGCCCCACCTGTCCCTGTCTGCTGCTGAGATGGTTAGTTGGATACACAGGTCACACCTCATGTCTAGCAAACCCTGGTCCAGCCACACCCTTGGCCACGTCTCAGAGCTGCCTGGATAGAGTATTTTTCAGATCCCCAAGGGCTGGTGCCTTTTTGCTTAATGGTCCCTGCCTCACTGATTGTTTCCCTCTTGCATTCTGCTATAAGTAGCAAGGAGAAGCCAGGTGGCACCTTCCACACTGCTTGGAAATCTCAGCTTGATGTCCAGGCTCATCAGCTGCAGGTCCCACTTCGCACCCAACAGCAGAGCAGCAGCCAGCCAAGCTCTCTGCTGCCTCCTCCGGTTCCCAGTAGCACGGTCATTTCCATCTGAGACCTCACTGGAAGCACCTGTTGGGTCGGCATTGCTGCCGACATCCAGTCTGTGATGCTGTGTGCATTCTCCAAGACGGCGGCAGCTCTCCTCTTCCAGCCATTTCCAGGCTTGTCTTCATGCCTTTCTACCAGCAGTCGTGCAGGCCTCACCAGTTCTTCCAGCCTCTCCCCATCACCCACTTCCAAAGCTGCTGCCACAGTTCTTGGTGTTAGGTTTTGGCAGCACCCCTCCTGGCCCTTCCTGGTACCAAAATCTGTTCGTTTACTGTGGCTGCTGTAACAAAGTGTCACAAACTGGGTGGCTTAAAAAACAGAAATAGATTGTCTTAGTTTTGGAGGCTGGAAGTCCAAGATGAAAGTACTGGCAGCCCCGTTCCCTCTGAACCCTCTTAGAGACCTCCGTTGCCCCCCAGCTTCTGGTGTTTGCCACAGCCCTTGGTGTTTCTTGGCTTGTGGCCGCGTTGCTCCAGGTGGTCTCTGTCTTCGTGTGGCCCCCTCCCCGCCTGCCTGTGTCTTCCTATCTTTCCTTTTCTTAGAAGGACCCCAGTCAGTTGGGTTAGGATGCACCTCAGTTACATCTGCATCAACCCTGTTTGCAAATATGGCCACATTTCCAAGCACTGGGGGTCAGGAGGCCCCTGTAGCCTTTTCGGGACACACCTTATGATGCTGGCCCCATTGCCCTTCCATGGTGGCTGAGCAGGTGGGGACCCCACCCAGTCCTGTGCTCTCGCTGCTCACCTGCCTGCCAGGGTGGGGTGGGGCAGGTGGCTCTGGGAGCCCCTTTCTCACTGGTACCAGGTGGCAGAGCCCACGGGCCTGAGCGCCCTGCAGCCGAGCTGCCCGTGCTGACCCTGGCCCTCCTTAG
Seq C2 exon
GCCATGCGGACCCTCAGTTGGAAGCACACCCTGGGCCTGGTGACCATGGACGTGGAGCTGGCCGACCGCACGCTGTCTGTGGCGGTCACCCCAGTACAGGCGGTGATCTTGCTGTATTTTCAGGACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000176248-ANAPC2:NM_013366:10
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.203 A=NA C2=0.232
Domain overlap (PFAM):
C1:
PF0088817=Cullin=FE(17.5=100)
A:
NA
C2:
PF0088817=Cullin=FE(11.3=100)
Main Inclusion Isoform:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)