DreINT0029623 @ danRer10
Intron Retention
Gene
ENSDARG00000030364 | angpt1
Description
angiopoietin 1 [Source:ZFIN;Acc:ZDB-GENE-010817-1]
Coordinates
chr19:47297510-47300755:-
Coord C1 exon
chr19:47300600-47300755
Coord A exon
chr19:47297632-47300599
Coord C2 exon
chr19:47297510-47297631
Length
2968 bp
Sequences
Splice sites
5' ss Seq
CAGGTATAT
5' ss Score
7.88
3' ss Seq
GAGTGTCTTCGTTTTTGCAGGTT
3' ss Score
9.48
Exon sequences
Seq C1 exon
ATTGAGAACTACATCAAAGACAACATGAAGACGGAGATGGTGCAGCTACAACAGAGCGCCGTCCACAACCACACGGCAGCCATGCTGGAAATGGGCACCAGTCTTCTGTCCCAAACGGCAGAACAGACGCGAAAACTGACCGACGTGGAGACCCAG
Seq A exon
GTATATTAAGACAGCACTATCCTAGAAAAATATGCAATATTGCTGTTAAGTATTGCAATAACTACAGTGCTCAACATAACTGAGTACAACCCATTTTAGAAATTAATATTTCTATCCATTTTTCAGTGGATATAGGTCATAGACTTAAGTGCTTTTGAACAAAACAGATTTATTAAATGGATATATTTATTAAAATCTGGGTGCTCCAGTTTTCCCACACAAGTCCAAAGTTGAATTAGGTAGGCTAAATTGGCTGTAGTGTATGTAAATGGAAGTGTATGGGTGTTTCCCAGTGATGGGTTGCAGTTGGAAGGGCATCCGCTACGCAAAACATATGCTGGATAAGTTGGCGGTTTATTTCGCTGTGGCGACCCCAGATTAATAAAGGGACTCAGAAAAGAAAATCAATTAATGAATTTATTCACCAAGCATCTTTAGAAGTTGAAATATATTGCATTTAAATTAATTAAAAATATTGGAAAATAAAATTACAAACTACAAAATTTATTTATCAATTTTTTCTTTCTCTTGAATTTTATTTAATATTTTTCCCTATAGCATGTAAATCTGGGTGTACTCATTTTGGACCGTTATCATACATTATTTTGGTAGATTAGCTCCAGATTTGACTAATCTACTGCATATGCACAAACATAATATTGTAAAGCTTCCTATAGAAAATATTCATCTAAATGAGAGATAAATCTAAATGTGAAGGGTGAACATATATGTTGAGCATGGTATATTTCTTACGATATAGCATTTCCCTAGAAAAATGCTATTTTTAATGAGCCGTCTTTTTAAATCATTTATTTATTTAATGATATTAAACTAAACAGCTAAATATATTTTAGATCCAACTCGTTCTGAATCAGAATTAAAATGTGGGTTAAAGTGCAAATATTTAGTGTTTAACGCACTATAAATGAATGAAACCCTCTGTTCCGGCTGTTGTTATTTTCAATTCGATTCATCTTTATTTGTGTAGCGCTTTTACAATGTGGATTGTATCAAAGCAGCTGAACACAGCTCAGCATTCAGCTTTGATGCTCCAGCCAATAGCAAAACAGCAACCTCTTAGGAGGCGGGTTAAATATAGCATGGCCCCGTCTGATTGGTCAAATTTAGATAATCAACCAGTGCATAAAGTATATGTAAATTATTACAGATTTTATTATTTTATTATTACATATTATTACAGATTTCTGCAATATGTACAGTTGAAGTCAGCTTTTTAACCCTCCTGTTAAATTTAAATTCTTTTATATTTTTTCCCCAATTTCTGCTTAACAGGCAGAAGATTTATTTCAGCACATTTCTAAACAAAATAGTTTTAATAAGGGGCGAGGCAGTGGCGCAGTAGGTAGTGTTGTCGCCTCACAGCAAGAAGGTCGCTGGGTTGCTGGTTCGAACCTCGGCTCAGTTGGTGATTCTGTGTCGAGTTTGCATGTTCTCCCTGCCTTCTCAAGGGTTTCCCCCAGGTGCTCCGGTTTCCCCCACAGTCCAAACACATGTGGTACAGGTGAATTGTCCGTAGTGTGTGTGTGAATGTGTGTGTGGATGTTTCCCAGAGATGGGTTGCAGCTGGAAGGGCATCTGCTGCGTAAAAACTTGCTGGATAAGTTGGCGGTTCATTCCGCTGTGGCGACCCCGAATTAATAAAGGGACTAAGCCGACAAGAAAATTAATGAATGAATGAATTAATTGTTTTAATAACTCATTTCTAATAACTGATTTATTTTATCTTTGTCATGATGACAGCACATAATATTTGATTAGATATGTTTACAGTCACCAGTGATCAAGCTACAGCGGATCACTGGAGAACTACACACACGCCACAGTTAAGAACTACAAATCCCGTCAAGCACCACACACACACACCTGTTCCGGTTTTCTCTGATTATACGCGCAAACACACAAACTCACAGCTGAAGCTCTTTGTTGTTTCATTACCTGGGCTATAAAGAAAACACCCACACACATTCACACACACATCTGGACTGAGTCTTGCCATCTGTTTTCCTTTGCCTTCTTCTTGCCGTGTTTTGACCCTTGCTTTGTTTTGTTGTTTTATGTAGTTTGCCGCCAGTACCGACCGCGTTCCTGCTTATTGACTTTGACATTGGATTATCTGCATGTACCCCTTTGCACCTGTTTTGATTGTTGCCCTTCGGACCAATCTGCTAAATAAACTGCACATGGATCCTCAATTTCGTTGTCAGCGACCATCAGTCACAATACTAGTATTCAGCTTAAAGTGACATTTAAAAGATTAACTATTTTAATTAGGGTAAAGTTAGGGTAGTTAGGCAAGTCATAACAGTGGCTTGTTCAGGAGACAATCCAAAACTAATATTGCAGAAGGGTGCTTATAATATTGTGCTTAAAATGGCTGTTAAAAAAATTAAGAGCTGCTTTTATTCTAGCCGAAATAAAACAAATAAGACTTTCTCCAGAAGAAAAAATATTATAGGAAATACTGTGAAAAACTCCTGAAACTGTTCAACATCATTTGGGAAATATTAGAAAAGAAACAAATTGACTTCAACTGTATATTGCATATACTATTATCACGATACCGATATATTGTGCAGCACTATGCATTTCCCACTCCATTAAAGCAGCAGTCTATTTTCCATGTATCCTCTTAACACGGCTCCCACTAAGCCAAGAACAACACGAGCACCACAGTCTCTTTTTTTTCATGCGTCGTTCTCATGTTGTTCGTTCTGAATGTCTTTATGACTGCAGAGGGAGATTGTAAGGTTGTGTTTTGCTGATTTGTCAAATAAGAGCTTGAATAACTGTTCATAAGTGCTGTCGTATGGTGCTGCGGTATAGCGCGGTGTGTTTATGACTTCTCCTGAGGCACGGCTCACTTAATACTGACTTACTAATGCTTTTTAGGTCTGTGTTTTTGCGGAAGGATTACTGTATTTTTATTGGAGTGTCTTCGTTTTTGCAG
Seq C2 exon
GTTTTGAATCAGACGTCGCGGTTGGAAATTCAGCTGCTGGAGAACTCGCTGTCCACCAATAAGCTGGAGAAGCAGCTCATGATACAGATCAATGAAATCAACAAGATTCATGACAAGAATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000030364:ENSDART00000043713:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.635 A=NA C2=0.049
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]