GgaINT0100449 @ galGal3
Intron Retention
Gene
ENSGALG00000016083 | Q70UN6_CHICK
Description
NA
Coordinates
chr2:137042618-137045921:-
Coord C1 exon
chr2:137045766-137045921
Coord A exon
chr2:137042740-137045765
Coord C2 exon
chr2:137042618-137042739
Length
3026 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGT
5' ss Score
9.8
3' ss Seq
TTTTTAATTTTATCTTTAAGGTG
3' ss Score
10.92
Exon sequences
Seq C1 exon
CTTGAGAGTTACATTGTGGAAAACATGAAATCGGAGATGGTGCAGCTGCAGCAGAATGCTGTGCAGAACCACACTGCCACCATGCTTGAGATAGGGACCAGCCTCCTCAGCCAGACAGCAGAGCAGACAAGAAAACTCACGGATGTTGAAACGCAG
Seq A exon
GTATGTTCCCAGAGCAGTTTCCTAAAAGCTTTTAATTGCTGGAAATTTTACCCATGTTTTCCAGTTCATTATCATACAAAACATTTCAACACAGGTTTCCAAGAAATTTACACGTTGGTATGAACAGCAGTGATCTTTTATGTGACTTTCTTCAGGATTCATTTTGTTGGTATATTTAGCTCTAGGTGTGTAAGGCAGGCTGGAATGGCTAGGAAACTAAATCAGTACTTGACTTCAAATTAATAGCTCAGTTACCAACTGTGAATGATACAAATGTCAAGCTAGATAATGAGTTTCAGGCTAAAACAGAGCCTTTGATCTTCATTATTACTGGCCTTTATTCTTTTTATAAGGTTACTTTTTGGAAGATGTTTCTAGTTGAAAGGTATTGTACATCAGCAGCTTTTACAGTGTGATGATAGAGGGACCAGCACCAGCTTCTTTATAAAACACTGTGTATTATTGCAAAATTGCATAACATCACATGAATTTGAAAAGCCATCTCTCTATGATTCCTAGAACTAAAATAACACATTTGACTCAAGTGACATGTATATCACTGTTATAACACAGAGTACAATTTCCTATCGGGCTTATTGCAACGTACAGATTTTTGCCTTTTCAGTTCTATCAGTTTAAGATGCTTATTTATTTTTGATCTTCCTAGCATGTGGTATGTTACACAGGAGTTTATGTGTTGCATTTATTTGGTTTGTTCTAGTAGCATATGTACTTCTGGGGAGATCGTAATGTTCTTATTCACATTTAAAATATCATTACCATGTTATTAAGTAACTGCATTACAATACACTGAGAAGCTGCAGCAATTATGAAAGACAGATGCTCTAAATAACTCTGGCTAGGAATGATACGTGCAAGCTGTTGCTGCACTGCCTTACACAGGTACCTTTATTACTACATCTTGACTAGTAGATAAACATCCACTAAAGAATGCAGTGATCTGAAATGACCACAGCTTTGAAAATATACCACAGTAACTCATGAAAATGTTGGGAATGGTATTTCAATAGAATATAGAAATCAATACAATAAAGATATCTAAATTCAACAGAATATCTAAACAGAGACAGAAGCTGTGAATACCTTCTGTGGACTGTGATATCACTTGCTCAGAAGAGAAAAAGGTGTAGGAGGAGGTATAAAAGACCTCCTTAGGTGTAGGTGTTGAGAACACATTTGTTGTTCCCTCATCCAACTACATAAGGGAAAATATATATGTACATTACCCCTGTCTCAGGTTTCCATTGATGAATCGGTTCAAGGTGGAAGCACCACCAGTGACTTCCTTCTTATTCTATACCTATAGCTGAAGAATTTAAAAGATGCTAAGGATACCAGTTGGTATCTACCTTGCTGCAGTCCTTGCTCTGAATTCCATCCCAGTCACACATTTCCTACTTTGACTCTCACAGCAGCATGGGAAAGTCCCTGTAGACTGCCTCCACTAGCAATCAGAAAAGCATGGTGCAGAAGGCTACAGAAATGAGGCTGCTGTTGGCAGTGATGAGACAGACAGACAGTTCTATGGCTGTAGTGGATTGTCCATGGCTGATTGCCAGGTGTGCCACAAACCACTCTCTCAATCTACTACCTCAGTAGGACAACAGAGAAAGTAAGATGAAAACTTCTTTGATGAATACAGTGACAGGAAATTTCTCACTGCTTATCATCGTAGGCAAAAATACTCAACTTGAGGAAGATTAACATAATGCTGATTAGTAACAGTAGGATAATGAGAACTAAGTAGGCTACTCCACATGTATATCTTCTTTGCAAATCTATTGGTGCCTTCCTTTCTCCTTGATCCTTGCCAACCTTTGTAGTACATCAGTTCCTACCAGGCCCTTCTCAAACTGTGGCGATGCCTCCTGGCACTTACAAATATATACATCTCAAACAAAATATCTGCATAGAGATCAATTCCAACTTTTTCAACCACTGTACCCTATTAAAAGGCCAACTCAAGTCACTCTGTGAGTATCGAGAACTTCAAACAAAAAGATGGCACTGCATATATTAAGGGTGATAGCCAGTTTTTTCCTTTATGCTCTGTAACATAAATTCCTGTTAGGCATATATGAAAAGATGTTACTATTTAATCCTATGATGAGACTGAAATTTGGTCTTCCAAGATAGGTATGATAGGTCCTTTAGAGAGGTATCCTGTTCAGTTCCAGAAGTGATTACATCTCACAGCTATTGTGTGCACACTTAACCTACAAAAATATTAATACATGCTTCTCCAGAATCTATGCAATGAAAAACAATATATCAGCAAAATCAGCCATCATAATTAATTTTATTGCTTTCATTCTTGATTTTATTTTCACTTCTGAACTATTATTCAGCATTTATCCTCTTCCATCTAAATGAACATCTTCTTTCAGTCTGATGTACCTAGTAAGATTTGTTTTGTTGATGCAGACCACACTAAGGTGAAAGACAATTGCATAAAGCAGTGTTTAAGATTACAGCCTTCAACTCTTTTTTTTTTTTTTTTTTTTCAATAAAAGGAAGTAAGAGGGCAAATAGTGATAACATAAGCAGAAATCAGATTTCTGCCAACACTACAAAAGAGAGCTCAGGGGAAAACTAGAGTTAGAATTCCATTTACAAAACAGCAGATGCGATACTTTGGCTTAAATTCAAGTACATTTGCACTCTTCTAGTTTAAGCTTGCTTTATAAGAATGAATGTTTGAAGCATATCTTTTGCTCTTTCCATTGAAATAAAGCTCATTTGGCAGTCACCTTTCCTTCTTTTCCAAGACCAGTACTATTCTACAGCACACAGGGTTCCAGAGTGTCAGCTGTTACGTATCAATGTAGGCTGATAGAGTTCATTTGCACTAGCGGAGTAACTGAGTTTAAAGAAAAGGATTTAGTAATGAGGGTTATTTCTAATAAATCATCAAATCAGAAGAGAAGGATTTCAATGTGTTTACATTGCTATAGCAACACAGTTGGGATATTATAAACATTGATGTTTTTAATTTTATCTTTAAG
Seq C2 exon
GTGCTAAATCAAACATCCAGACTTGAAATTCAGCTACTAGAAAATTCACTGTCAACCTACAAGCTAGAAAAACAGCTGCTACAACAGACAAATGAAATCCTGAAAATTCATGAGAAAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016083:ENSGALT00000025915:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.212 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]