DreINT0032325 @ danRer10
Intron Retention
Gene
ENSDARG00000017748 | arhgap29b
Description
Rho GTPase activating protein 29b [Source:ZFIN;Acc:ZDB-GENE-031010-44]
Coordinates
chr2:15505575-15507937:+
Coord C1 exon
chr2:15505575-15505712
Coord A exon
chr2:15505713-15507746
Coord C2 exon
chr2:15507747-15507937
Length
2034 bp
Sequences
Splice sites
5' ss Seq
GCGGTCTGT
5' ss Score
3.56
3' ss Seq
TTTCTCACACCCTCTTGTAGGTG
3' ss Score
9.94
Exon sequences
Seq C1 exon
GCAGAGGAAGCGCAGGAGCAGTATAAAGCCTGTGTGGCCGATCTGGAGGCCAAGAAGGTCAGCCTGTCAAACGCTAAGAGTGAGATCCTCGCACAGATTCGGAAGCTGGTCTTCCAATGTGACCTGACCCTCAAAGCG
Seq A exon
GTCTGTATCCCTGTCACAACACTATTACACACTACTGTTGAAAAATGCGCAGCGGTTTTCTTCTTCTTCTTCTTTGTTTAATTCTTCTTCATTTAATTCTTATATAAGAAGCTTCGGTTTTTAATAATAATTTTATATGTACAGTTGAAGTCAGAATTATTAGCCTTTTTTTTTTTTTTTTCAAACGACGTTAAACAGCAAGGAGTTTTTCCACAGTATTTCCTATAAAAAAAAATTCTTCTGGAGAAAGTCTTATTTGATTTATTTTGGCTAGAATAAACACAATTTAAATGTTTTGAAACCCTTTTTTAATCAATATTATTAAATCCCTAAAGCAATATTTTTTTTAATTGTCTACAGAACAAATTTAACAATTTAACCTATTGTCTGCAGAACTATTTAATTTAACAATTTAACCTAGTCTTTATTTATTTATTTATTTATTATTATTTATTTTTATATTTATTGTGTACTGTTCTCATGGCCAAAATAAAATAAATCAGAAATGAGTTATTAAAACTATTATGTTTAGAAATGTGAAGAAAAAATAACTTCTCACCATTAAACAGAAATTGGGGAAAAAATATACAGTAGTGCTAATAATTCAGGGGGACTAATAATTCAACTGTATATATTTACATTTTTATTTGTATTTACATATTTATATTTACCAAAGCTGCATTCAAAAAGATCTAATTTAAATACACCTCAAGCAACACAATCTAAATACACTAAAACTACAAAATACATAAACTAATAAAATAATTTACTGTATATTCTATGATGTAATTTATTCATGCGGCAACATAGCTTAATTTCCAGCAGTCATCATTCCAGTCATTCTAATTTGCACATTTGGTGCTCAAGATCAGTGTTGTTAACAGTTGTGTGCAGCTTAACTGCTTGTGCAACATATATTTGTTTTTTTTTTTGTTTTTTACTACTTCTTATTAAGTAGTAATGAAAAAAGTACTTTTTAAAAATCTTTTCAACCACATGTCTGTTCCATAAAAATTTACCATATTGTAACATATTTTAAATACAGTTGAATTCATTATTATTAGTCTCCTGTATATATTTTCCCTCAATTTCTGTTTCAGTTCGGAAAGAAGATTCATTCAACACATTTCTAATAGTTTTAGTACCACATTATAGCAGGATTACCAATAACACATTGTAACCAACATAATAGTTTTATCACTTTGGACCCCTCACACCCAGCACACTGCCTCTCTAAACTTTTACCTTGTGGTCGACGCTACGGGGCACTGTGCACCAGAACAGATCGCCACAGAAACAGTTTCTTCTATTTCATGGACACCTTATTATAGTAATTGTGAAACAACATCACTATTTTAAACACATATACACTTACTTATTTAACAACATACTTTACATGCCAGTTTGCACACAACTGCTGCACATATAACGTTGTATATAGTAATATATCTGTATGTACACTTGTCCAGTTGTATATTTGCATTCACTACTTACTTCTATTTTTAAAATATATTTATTATCTGTTTTTTTGTCCTGTCTCTGTCGTTCTGTTGCACTGTAGAAGCTCTGTCAAGAAAACAAATTCCTTGTATGTGTGAACATACCTGGCAATAAAGCTCTTTCTGATTCTGAATCAAAAACAAATATTGCTTAAGGAGGCTAATAATATTGACGTTAAAATAGTTCTTAAAAATTAAACACTGCTTTTATTCTAGCCGAAATAAAACAAAATTTTGTCCAGAAGAAAAAATATTATAGGATATACTGTGAACAATTCCTGCCTCTCTTAAACATCATATATTTTACAGAAAAACAAACTTCACAGAAGGGCTGATCATTTTGACTTCAACTGTATGTTGCATAATTTTTGTAATATTTTATAACTTCTGTAAATGCTAAATTGGATGAATTGAATGCATTCTTTGCTGTTTTTTTATCGTATTGAATATTTTGAACAATAGTATATGTATGTTCAACATGTATTTGTTATTCCCCCTATTACTGCACACTGAATTTTCTCACACCCTCTTGTAG
Seq C2 exon
GTGACAGTGAACTGGTTCCAGATGCAGCAGGCTCAGACTATGCCCCTGTCCGTCAACTACCAAGCTCTAAGCGAACAAGCCAAGAAGTACGAACCAGGTCAGCGCTACTCTGAATTTGTGCGCAGTCTCCCTAAAGAGCGTGTGTGGCTGGAGTCTCTGTCTCAGGACATCACCGCTTCCTCAAAAACGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000017748:ENSDART00000141921:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.266
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]