GgaINT0037541 @ galGal3
Intron Retention
Gene
ENSGALG00000005683 | ARHGAP29
Description
NA
Coordinates
chr8:14333586-14334314:+
Coord C1 exon
chr8:14333586-14333723
Coord A exon
chr8:14333724-14334180
Coord C2 exon
chr8:14334181-14334314
Length
457 bp
Sequences
Splice sites
5' ss Seq
GCTGTAAGT
5' ss Score
8.56
3' ss Seq
AATATTTCTTTTCCTAACAGGTA
3' ss Score
10.81
Exon sequences
Seq C1 exon
GCTGAAGAGGCCAATGAATACTATAAAGCAAGCATGGCAGAAGTTGAAGAAAAAAGAAGCGATTTGGAAAGCTTTAAAAGTGATGTTTTAACACAGCTTCGGGAACTTATTTACCAGTGTGATCTAACTCTTAAAGCT
Seq A exon
GTAAGTATGCTTTTTTAAAATACTATTGGCAGTAAGGCAACTTGACCTAATTTTTAAGTTGAGGTATGTGAAGATTCTTAAGTGTGAAAGAAAACTGCTGTACCATTGACATCCACCTCTGATGTTATGGATGAAATCGTAACAATCCCTCCAGAAGGTGAAAATTGCCCGTTTGGTAGCAACAAACCATGCTGTTTATCCTATTCAATCCAAAGTAGGAAACCACTGGAACTCATTGCTACTTGGTGTGTTTGTTAAGCCAGAGAGGAAAAGAGGAATACTGCCTCATAGAAAGGACCTGCAAGTAGACATCTAGGAATCCTGCACAAAATCCACTCCTACAAGTTTTACTATTTCCTAGAATTTTCTAGTAGTAGTCTTTAAATTGTCTTGATACTAATTTGAGAAATACCTAGTGAGTGATGCACAAATACTGTAATATTTCTTTTCCTAACAG
Seq C2 exon
GTAACAGTTAACCTGTTCCAGCTGCAGCATGCACAGGTTGTATCTCTTCCAGTAAACTGCCAGTCACTCTGTGAGAGTGCCAAACTTTATGACCCTGGTCAGCAGTATTCAGAGTTTGTGAAAAGTTTGCCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005683:ENSGALT00000009113:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.022 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGAAGAGGCCAATGAATACT
R:
TGGCAAACTTTTCACAAACTCTGA
Band lengths:
270-727
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]