DreINT0034172 @ danRer10
Intron Retention
Gene
ENSDARG00000033361 | asl
Description
argininosuccinate lyase [Source:ZFIN;Acc:ZDB-GENE-040426-1152]
Coordinates
chr21:31223473-31223708:+
Coord C1 exon
chr21:31223473-31223525
Coord A exon
chr21:31223526-31223645
Coord C2 exon
chr21:31223646-31223708
Length
120 bp
Sequences
Splice sites
5' ss Seq
AAGGTTGAC
5' ss Score
1.86
3' ss Seq
TTTTTTTAATAACTCCACAGAAC
3' ss Score
7.96
Exon sequences
Seq C1 exon
TGGAGCCATTGCTGGGAATCCCTTCGACATTGACAGAGAACTACTTCGCCAAG
Seq A exon
GTTGACATAATTTTATAAATTAGCTTTCCTGTAACTCATGCTTTAATTAAATTCTAATATAATTAGTGATTTGTGTGAATTTATTAATCCGATTATTTTTTTTTTTTAATAACTCCACAG
Seq C2 exon
AACTCAGTTTTGACAGTATCAGTATTAACAGCATGGATGCTACTGGACAGAGGGATTTTGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000033361:ENSDART00000040190:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0020615=Lyase_1=FE(6.1=100)
A:
NA
C2:
PF0020615=Lyase_1=PD(8.7=90.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATTGCTGGGAATCCCTTCG
R:
AAATCCCTCTGTCCAGTAGCA
Band lengths:
106-226
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]