RnoINT0021930 @ rn6
Intron Retention
Gene
ENSRNOG00000000903 | Asl
Description
argininosuccinate lyase [Source:RGD Symbol;Acc:619974]
Coordinates
chr12:30174981-30175892:+
Coord C1 exon
chr12:30174981-30175033
Coord A exon
chr12:30175034-30175829
Coord C2 exon
chr12:30175830-30175892
Length
796 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
TTTTCCTCCCTCACCTCCAGAAC
3' ss Score
11.57
Exon sequences
Seq C1 exon
TGGGGCCATTGCAGGCAACCCTCTGGGTGTGGACCGGGAGTTCCTCTGTGCAG
Seq A exon
GTGAGGCACCTTGCTCATCCCTCTCTAGAGACTGTCACTCTTAGCTTCTGCTGGTCTCAAAGACACACAAGATGACATGTGGGAGGCCCAGACAACTTGTGCCCACAGGAAAACACTATGGGACCAAAGAGTATCAAACATACAGGGCCGTAGGTTCAATACCACTCAGCAGCTAGTGTTGGTTCAGGCTTCGAGAGTTTGGCCCCGATGCTTTATTTTAGGCACATTTAAACACAGCACAATTTGGTGAAAAATTTTCCCGATGACAACTAACTCAATCCTATGTGCACAATAAAACTTAAGAAACGATTGCATTGAAACTCTTTGTAAAGTTCATGCAACAGCTTCCATAAACATGGGTTCTACAGATTGACCAGCTCCTGATCAGGATCTGGGGGAGGATCCGGTGTGGTCTCAGCTACACAGTGCAAAAAATCACCCGGTCACCAACCACAACCATTCCCAGGCTTCTGGGCAGAAAACAGGTTATAGTATAACCTGTGTGACATTTCTGGGTCCCCAGTGCTTATCCGTAAGGACCAGAACCTCGGCTCCGCCCACAGTGGGAGGCCCATGGGTATTGAGATTAATGGAGTTGCCTATGTCAGGGGTCCCTATTGTTGAGAATATTTAGGCCCCCTTCCATTCTTGTAAGCTCTATATAGAGACGCTTTTCCCCACCTCATACCCTTCTTTGATTCCCATTTCCAAGAAGGGGTCAAAGGGTGAGGCCGGGCATCCAGGTTTGGGCACTTCTTGCCTTCCAGCTTAGCTGTTTTTCCTCCCTCACCTCCAG
Seq C2 exon
AACTGAACTTTGGAGCCATTACGCTCAACAGTATGGATGCCACCAGCGAGAGAGACTTCGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000903:ENSRNOT00000001211:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0020615=Lyase_1=FE(6.1=100)
A:
NA
C2:
PF0020615=Lyase_1=FE(7.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]