GgaINT0130777 @ galGal4
Intron Retention
Gene
ENSGALG00000002576 | CRYD2
Description
argininosuccinate lyase [Source:RefSeq peptide;Acc:NP_001025885]
Coordinates
chr19:4935490-4936035:-
Coord C1 exon
chr19:4935983-4936035
Coord A exon
chr19:4935553-4935982
Coord C2 exon
chr19:4935490-4935552
Length
430 bp
Sequences
Splice sites
5' ss Seq
GCGGTAAAT
5' ss Score
6.76
3' ss Seq
GTCCACCACTTCTGTTACAGAAC
3' ss Score
7.84
Exon sequences
Seq C1 exon
TGGTGCTCTGGCTGGCAACCCACTGGAAATTGATAGAGAACTTCTTCGTAGCG
Seq A exon
GTAAATGTCTCCCTGATTGAGTAGCACAGGTCTGATTATAATATCTGGGAATTAGAGAAACACTGACACACTTTCATAATGCTATTTTGAGATATATCGCAGCACCGTAGCATGGGGAGGGAGGATAATAAATACAAATATTGAATATTATCTGATGACCAGGGGCACAGGTTGCAAGTAGCTCCCCAGGAATTGGTAAGCAATAAGACTTTTTACCAAATTAAGAAAGCACATGCCCATATTGTGGGATAATAGATTAAATTGAACCACTTCTGCTACACACTGGCCACCTGGGACAAGTAACAGCACCTCAACACAGCTTATTTGTGTTCCTTGGACTACTAAAGGGCTCACTGACACCTGCTGGGGCAACCTGCAGACTTCAAGTTAGGCTAAACCTGACCTCTTCTGTCCACCACTTCTGTTACAG
Seq C2 exon
AACTGGACTTTGCTTCCATCAGCCTGAACAGCATGGATGCCATCAGTGAGAGAGACTTTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002576:ENSGALT00000004043:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0020615=Lyase_1=FE(6.1=100)
A:
NA
C2:
PF0020615=Lyase_1=FE(7.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]