GgaINT0131675 @ galGal4
Intron Retention
Gene
ENSGALG00000002558 | ASL1
Description
Delta-1 crystallin [Source:UniProtKB/Swiss-Prot;Acc:P02521]
Coordinates
chr19:4948283-4948714:-
Coord C1 exon
chr19:4948662-4948714
Coord A exon
chr19:4948346-4948661
Coord C2 exon
chr19:4948283-4948345
Length
316 bp
Sequences
Splice sites
5' ss Seq
GCGGTAAAT
5' ss Score
6.76
3' ss Seq
CTCTGTCACTTTCCTTACAGAAC
3' ss Score
10.91
Exon sequences
Seq C1 exon
TGGTGCTCTGGCTGGCAACCCACTGGAAATTGATAGAGAGCTTCTGCGTAGCG
Seq A exon
GTAAATGTCTACTCCTGAGTAGCATGGGATACATTTGACGTATCTGGGAGGGAGGGAAGAAAAAGCAAGTGACTTCCCAAGGCATCATCATGCACTGTAATCCTGGACCAAGTGTCAAGGATTCATATGTTTTTTTTAATGCAATAAGACAGGCTATGTCCAAGAGGTGGTAGCTCCCATGCAGCATAACACTTCAGCTCGTGTGTGCAGCTGGGACTACTCCAGGACTCAGTCACCTGTAGGCTGGAGCAGTCTGCTGACTTCAAGCCCTGGTCATGATAAACCTGACCTCTTCTCTCTGTCACTTTCCTTACAG
Seq C2 exon
AACTGGACATGACTTCCATCACCCTGAACAGCATAGACGCCATCAGTGAGAGAGACTTTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002558:ENSGALT00000039936:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0020615=Lyase_1=FE(6.1=100)
A:
NA
C2:
PF0020615=Lyase_1=FE(7.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]