DreINT0034530 @ danRer10
Intron Retention
Gene
ENSDARG00000011298 | atf7a
Description
activating transcription factor 7a [Source:ZFIN;Acc:ZDB-GENE-050721-2]
Coordinates
chr23:27526270-27528634:-
Coord C1 exon
chr23:27528485-27528634
Coord A exon
chr23:27526459-27528484
Coord C2 exon
chr23:27526270-27526458
Length
2026 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
3' ss Seq
CTCTTGCCTGCTGTGTTCAGGTG
3' ss Score
9.01
Exon sequences
Seq C1 exon
AGGTTGAAAGCAGCATTATCTCAGCAGACATCCTCCGCTCAGGGTTGTCTTGGTGTGGCGATGGGCTCTAGTGCAATGGTGCCTCAGAGGGTGGAGCAAAGCCAGCTGCTGGTTCAGCATCCAGATGCTCCATCACCTGCTCAGCCACAG
Seq A exon
GTAAAGCATGCAAAAAAAAAATATATATTTATATATATATATATATATATATATATATATATATAATAATAATAATAATAATATATATATATATGAAAAAGTCAAGGTTTATGTTTCTTATGTCTTGTAACAAAGAGAGCAGAAGTCAATGATTTATCTCAATTATCTAGCCTGGCATGTTTACTGTACCAAAAAATTATGAATGTAATATATTTTGTTCAATGGGGGAATTAATTTTTTTTCCCAGACATTTCAAAAGTACTTGTTTTAGAGCTGTGATCACAATACCGTGACACCGTGATATTTTTATCAAAGGTTAATGTACTATCAGAATCTTATGCTGGCCCATGCCTAGTACAGATTACTCTGTATTAATTTCAGTAGTATAGAAAAAAAAAGTATGAAAAATATTAGATAAATTATATACAGTAAATATTTATGCTGTTAATAATTATAAGTGAATAAACAATACATTAAAACAGCCTGTTCACTTTTAATCAATTAAATATAGCAATATTATTGAAATAAAAATTGTTTAACAAATTATCAAAGAAACCCAATAAGCTGAAAGTTTAGCGCATAACTTTTTATAAAGTAATCGTAATTTAATACAGGGGTTCCCAAACTTTTCAGCCCACAACCCCCAAAATGACAATGCCAGTGACACGCGACCCCCAATATCTTCTGAGGTGGTTATAAATAGAGAAACCTTGCATGCAATGGTGCACACGCACAAATAGACCCAAGTCTATTCTTTGTTTATTTTTTTAATGTATGTGAGTGCTGTAAATGGGCCAGAAAGTTTACCTGGTGTTAAAAGTCAATCTGCTGCATCTGACACTATAGCTGTGTCTTTAATATAATATAATTACCCCAGGGGTCGCAATCCAATAGAACTAGAAACTATAAGCTACTATTTTTTTTTCTCTTTAGTAGGTTATGGATAAAATAGGGTAATTATTTTGGTTTAATAAAAATGAATAGATTTTTTGGAAATCACCAGGCAACCCCCCTTCATTGTCCCACGACCCCTCGGGGGGTCCCGACCCCAACTTTGAGAACCACTGATTTATTAGACTGCGTGAACTTAAACGTTGTCAAAAAATGTCTTCAATATTGTTATAACAGAAATGTCTTATAATTTAAACTAGAGTTGCTTATGTCTTATATAGTTGCTTATATATTCATTAATTTTATTTTATTTACGGCTTAGTCTCTTTATTAATCAGGGGTCGCCACAGTGGAATGAACCGCCAACTTATTCAGCATATGTTTTAAGTAGCGGATGCTCTTCCAGCTGCAACTCCTCACTGGAAAACATCCATACACACTCATACACTACGGTGAATTTAGATTATCCAATTCACCTATACTGCGTATCTTTGGACTTGTGGGGGGAACAGGAAAAAAAAGTGTGCTTAAAAGGTCAAACAAACCAAACAGTATATACACAGGATGTACATTCTGTTATTTTTCTGTTGCAAGACTTGAAACTATTTTGAAATATCAGAGTTTTTGTCCCATCCCCTGCTTTGATTATCACAATACCGAACATCACAATTTCAGATTCAGTCCTGCATTTTAATACTACTATCACTCCTGAAACAGAGTTAAAATAAAAAAATCTGTCTATATTACACAATGAATTTTTACTTTGTTTTTAAACCCTTTTGGCTACAAAAACTATGCAAAGCTCACACTAAACAAACTACAGTATAGTTTTCAGTGTCTTCTGGCTAACTTAAACTCCTCTGATTGGCCATTTCACATGCCAGGCACAATTGTCTTTGATTGGCCACAATGATCTATGCTGTAAAGACACTAAATATGAAAACGTTGATGCTCTTAATATTGACTCCATTCTTAAATCACTGCAAAAAAGCAGATTTTTAAAATGTGTTTGAATTTAAGCATCAGCTTTTGACAACAATACAGTATTTATATCATGTTTACCAGGGATTATCTTTCACTTTGATGTCACGTTAATCAGTGAAGCTCAGTGCTTACTCTTGCCTGCTGTGTTCAG
Seq C2 exon
GTGTCTCCCGCTCAGCCCACCGGGGGTCGCAGGCGGAGGACGGCTGATGATGACCCCGATGAGAGGAGGCAACGCTTTCTGGAGCGCAACAGGGCAGCGGCTTCACGTTGCAGGCAGAAACGCAAGATATGGGTGAACTCTCTGGAGAAAAAAGCTGAGGAGCTCACCTCCATCAACGTCTCGCTTTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000011298:ENSDART00000013563:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.927 A=NA C2=0.687
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0017016=bZIP_1=PU(70.3=71.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]