MmuINT0020292 @ mm9
Intron Retention
Gene
ENSMUSG00000052414 | Atf7
Description
activating transcription factor 7 [Source:MGI Symbol;Acc:MGI:2443472]
Coordinates
chr15:102371171-102376988:-
Coord C1 exon
chr15:102376836-102376988
Coord A exon
chr15:102371369-102376835
Coord C2 exon
chr15:102371171-102371368
Length
5467 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
3' ss Seq
TCTTCTTTACTGGGCAACAGGTC
3' ss Score
5.35
Exon sequences
Seq C1 exon
AGACTAAAAGCCACGCTGACCCATCAAGTTTCTTCAATCAATGGAGGTTGTGGAATGGTGGTGGGTACTGCAAGCACCATGGTGACTGCCCGTCCAGAGCAAAACCAGATCCTCATCCAGCACCCAGATGCCCCATCCCCTGCCCAGCCACAG
Seq A exon
GTCAGTTGTGCCCTTGGACGAGCACTGCAGGTGTGCTGCCCCTACTCTTTATGTTATATCTGTTTTTCAAGAATCATGAGATGGGAAAAGAATAAATTTAGCTTTTGGGGTAACCAGCTATTTGGTAGATTGACTACAGCAAAACAAACTATTCATTATCTACCTTCATGTTAGGCATAAATGCAAACAGCTTGAATTATGCAGAGCTTTTGCAGAAGAGGCCTCTGTATCTCCTGCTTATCTGTTAAGTCATAACAAAAAAGTTATCACGGGGCTGATGAGATGGCTCAGTGGTTAAGAGTGCCGACTGCTCTTCCAAAGGTCCTGAGTTCAAATCCCAGCAACCACATGGTGTCTCACAGCCATCTGTAATGAAATCTGATGCCCTCTTCTGGAGTGTCTGAAGACAGTTACAGTGTACTTACATATAATAAATAAATAAATTTAAAAAAAAAACAATCTTTAAAAAAAAAAGTTATCAGTCACCGGATTAGAGTTTATGGCATAAGACTCATAAGAATATATTAGGGGCTAGAGAAATGACTTAGCAGTTCAGATCTGCTCTTCAGATTTGAATTGAACTGCAGAGGTCCTGAGTTCAATTTCACAGCAACCACATGGTGGCTCATAACCATCAATAATGTAGTCTGATGCTCTCTTCTGGTACTCATACATAAATAAATAAATCTTAGGGAAAAAAAGAATATATTGATACTGGGACTGGAGAGATGGCTCAGCAGTTAAGAGCACTGGCTGTTCGTCCAAAGGACCTGAGTTCAGTTCCCAGCATGGCAGCTCACTACTGTCTATAACTGTAGTCCCATGGGATCCCATAACTTATTTTTTTGTTTGTTTGTTTGTTTCTCATTATGGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTAGACTCATGACCTCTGGAAAAGCAGTCAGTGCTCTTAACCGCTGGCCATCTCACCAGCCCCCATAACTTCTTCTGATGTACATGTAGACAAAACACCCATATACATACATAATTAAATCTTTTTAAAAAAGAATATATTAATACAATATATTGTTATAGTAGTAAAATAGATGGTTCATTAAAAACTAAGAAAACACATACAAAAAAGAACTTTCATTACCAATCCTCTAGTCCCTTTTCATCACAGAGAAATTAAAATAAAAAAAAAATTTTTTTTAAGCCAGAGGAGGACCCAGTTAGTTGCCTAATCTCTTCTCAACAAGGTCTCCATTTTAATACAATTCTTTAGGAACTGAATAGCTCCGGTTCTTGTAATTGTCTCTACTGGACAGGTGACAGCGACCTGAGATTGGTGTCTAGAATTACATTCATTGCCTCGTCTCTGTTTTACTGATGTCACCACCTGCTTCATCAGCTACCACCACATGTCCAGGCATTTCATGGCCATATGCTGCCATAAACCTTGGCCAACAACATGAGCTTTCATTTGTGTGTCTTCTTAGAAGCTGGGGCTTCCCACCATTCTGAGCTGCTCATTCCCCAAAGCCAGCAGCAGTTCTGGACACAGTAGAGCTCTGCCTGAGCTGGGTGGTCTTCCTCTTGGAGAAAGGCTGCAGCGCCCTTGTCAATCACTGCTGAGTTCTTGCTTTCTTTTTTTCTTAGCTTTTCTCATTTGTATTTAGTTTGGAATATTTTAAGGGAGAGATCTCAAACTCATGACCCTCCTGCCTCAGCCTCTTGACAGCTGAGGTTAAGGGCATGTGCCACACTCAGCTGCATTCCTTGAAGAAAGGCTCTTTATACTAGGATCCAAGCAGGGTAGATCTTTAGTTCATTATATGACTTAGAAATTCCCTAATTTATTTCTTTCAAGTGATACTACTAGTCTAAATAAATAAGTAAAATTATGTCTTAGTCACTGGTACTACTGGAGTACAAAGTTCAGTATTGCCTAAAGTAGATTTCCTTTTGTTGGCTTTTGAGATGGGGGTCTCACTATGTAGCTCTAGTTGTCCTAAAACTCACTATGTAGACCAGGCAGGCCTCAAAGTCACATAGATCTGCCTGCCTCTGCCTCTTAAGTGCTGGTATTAAAGGTAAGCACCAGCCAGGCAGTGGTGGTGCACGCCTTTAATCCCAGCACTTGTGGGGGCAGAGGCAGGCGATTTCTGAGTTTGAGGTCAGCCTGGTGTACAGAGTTCCAGGACAGCTAGGGCTACACAGAGAAACCCTGTCTCAAAAAAACCAAAATAATAATGATAATAATAATAATAATAATAATAATAATAATAATAATGATGATGATGTAGGGGCCAGAAAGATGGATTAGTGAGTGGAGATGCTTACCACCAAGCCTGATAACCTGAGTTCCATCTTCCAAATCATATAAAGATGGAAGGAGAGAACTGACTCTACAAACTTGTGCTCTGACCTCTAAACACACCATGGCATACGTATGTACATGTACATATGATGATGATGATAATAATAATAATATAATTTTTTAATTTAAAAAAGAATTACTTTTGGCATTGTTTTATATTCATTTTGTCCCCAGGAACAAGTTGACCTTTCTGCATTTGGTTGACTTTAGCTGCTATCATGAAGTTGACATGCCTTCTCTGTGTATGTGCCAAATAATAGAATGGAAAAATAATTCAAGGTGCTTTAGTGCAAAAAGTTTCAAATGGAGCCTAAAAAAAAAAAAAAAAAAAAAACAAAGACAAAAGGGAGTGATAGTGCACACTTTTGATCTCAGTACTCAGAGGCAGATGGATCTCAATGAGTTCAAGGTCAGCCTCGTCAATAGAGCAAGTTCCAGGACACCCAGGGCTCTATTACACAGAGAAATCCCATTTCAAAAAACCAAGAAAGAAAGAAGGAAGGAAGGAAGGAAGGTAGATGGATGGATGGATGGATGGATGGATGGATGGATGGATGCTAAAGCAGGAGGATTACTTCAAGTGTAAGTCAAGCCAGGGCTACATAGCAAGACTGTTTCAAAGAATAAATAATGTGTAAACCTGCAAATCCCTGTGTGTGGTAGATTGAGGCAGGAGGACTAGGCATTAAAGGCCAGCCTGTGTGACATAGCAAGACACAGTCTTTAAACAAGCACACACTATGCTCTATCGTGTTTGTAAATAAAGTCTTTTTTCTCTATTTGCAAACAACAAAGGTAGAGAGGCTTTGTTGAGGTGGTTAACTACTGATTGTAAATAAAAAGAATAAAACCAGGTGTGGTCCACACCTAGGATCCCAGCACCTGGGAAGTGGATACAAGGGGTCGGGTGTTCAAGGTCATCCTCAACTATGTATGGAGTTTGAAGCCATCCCAGTCTATGTGAGACCTTATCTCAAACAAAACAGGAGGCAGACAATGAGACTGAATAAATGGATAGGCATGGTGGTGCACACATAATTTAATCCTAACCCTGGGGAGGCAGAGTCAAGTGGATCTCTGTGAGGACTAGCCTGGTCTACATAGAAAGTTCCAGGACAGCCAGAGCTATATAGAAACCGTGTCTTAGAGACAGACTTGGGGGGTGGGGGAATAGATGTTAGCCTTGCTGAGTGTGCAGAAAATTCTGGATTTAATAGATACTCATATCCCTGCATAATAGTTCATGTCTCACTGATAGTTAAATGAATAAAGGCATTTTTCCTTTTCTGAAACCTGATATAATATGTGATTGTTTATATATGGTGCTTGTCCAAATTTTTGATTCTCAAGCATTTTATTATTTCTGTCTCCTTAATAGTATTGGGTTTCAGACCTGAGAGAAGGGACTGAGGTGCCTACTTTAATACCAGAGCAGACCTGGCCTCCAGGTTCTTTCAGCATTCCTCAATCCCTACTGTCCCCAACCCTGAACTTTCTGGTCCAGTGGCTGAGCTGCCCTTTTCCCAGAGGCTCTTTGTATGTAACCCAAATGCCCCCTTACCACCACCCCCTTCTTTCTCTCTCTCTCACCAGTCCCTCCCCCAGCTCCCCATGGTGATTTCCCTGGCCTCATTCTTTGGGATGAGTGAACTCTGCCACCTGAGAGTGGTTTCCCAATATCTGCTTTCATACTTTAATCTAGCTTGAATTGGTTCATTTGGCTGGTGGAGAAATAAAATCACATAACTCCCCTGTCACTCTCCCTAATTCTGATGTCCTTGCCTACAAGACTCCATACTGTAAAGAAACAAAAAGCACTAGGTGTAACATTGCACAGCTGTAACTCCCATGATCAGGAGTTTGAGATACAAATTTTAAAGGGACTTCCAGGCTAACCTGGGCTCCATAGTGGGGTTTGGATTAAATTGGACTACAGAAATAAGATCCTGTGTCAGGAGGCTGGAGAAATGGCTCAGCAGTCAAGAGCCACTTATGCTCTTGCAGAGGACTTTAGTTCAGTTCCCAGCACCTACATGGTGGTTCATAACCATCATGTTCCAGTGGATTTGACACTGTATCAAAGAAGGAAAGAAGGGAGAGGAAGGGAAGGAAAGAGACCAAGTAGTTGGGCCTTATGGCACAGGCCTGCAATCCGAGCTGCTTAGGATAAGACAGGAAGAGCAGCAATCTCAAAAGTTCCAGCAATTGGGGGGAATAGAGCCAGGAAGAACAGGAATTCAAGGTTGATCCGGGCTCCATAGTGAGTGGAGGCCAGCATGGACTGTGTAAGGCCATGTGTCAACCAACAAAAAGATTGTTAAAAAAAAAAAAAAAAATGTAGCTCAAACCAAGGTTCAGTCCCCCCCCCTCAAAAAAACAAAACAAAAAAACTTATGTAGACCTAGTTTGATTTCTGTGTCTCAGAAATAATCAGTTTCCAACAGAAGTATATCTTATCTGCATATGGTACTGGAAGGATTGGAAAGAGACGGGAAGGCAGAATAAGAAGCTAACAGACATAGTGATAGGACTTGGTATTATTCCAGATCTTTACCAGACCTTACTAATCTTCCTAGCTCAGGTTTGATTTCAAGAAAAAAAAAATGGTATTCCCATCAAGTACTTCTCTGTTCTGCCAAATGACAAAGTTCAAAGTTTGTGCCTGTGAATCCCAGCACTCTGGATGCCTATGCAGAAGGACCAAAATTCAGGGTCTGCCTGGACTATATAACAAAACTGTTCAAAGTCAAAAGAAAAAGGGGAAAAAGTATTGTCTTAGGGTTTTACTGCTGTGAACAGATACCATGACCAAGGCAAGTCTTATAAAGCACAACATTTAATTGGGCCGCTTACAGGTTCAGAGGTTCAGTCCATTGTCATCAAGGTGGGAGCAGGGCAGCATCTTGGCAGGCATAGTGCAGGAGGAGCTGAGAGTTGTACATCTTCATCTGAAGGCTGCTAGTGGGAGACTGGCTTCCAGGCAGCTAGATGAGGGTCTTAAAGCCCACACCCACAGTGACACACCTACTCCAACAGGGCCACACCTTCTAAAAGTGCCTCTCCCAGGGAAGAGCATATACAAACCATCACAAGTATTCTTCTTTACTGGGCAACAG
Seq C2 exon
GTCTCTCCAGCTCAGCCCACCCCTAGCACTGGGGGACGGCGACGGCGTACAGTGGATGAAGATCCAGATGAGCGGCGGCAGCGGTTTTTAGAGCGAAACAGAGCTGCAGCCTCTCGATGCCGGCAAAAGCGGAAACTGTGGGTGTCCTCCCTGGAAAAGAAGGCAGAAGAACTTACTTCTCAGAACATTCAGCTGAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052414-Atf7:NM_146065:9
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.941 A=NA C2=0.678
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0017016=bZIP_1=PU(70.3=68.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: