RnoINT0022351 @ rn6
Intron Retention
Gene
ENSRNOG00000015269 | Atf7
Description
activating transcription factor 7 [Source:RGD Symbol;Acc:1304940]
Coordinates
chr7:144144220-144146391:-
Coord C1 exon
chr7:144146239-144146391
Coord A exon
chr7:144144418-144146238
Coord C2 exon
chr7:144144220-144144417
Length
1821 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
3' ss Seq
TTCTTCCTTCTGGGCAACAGGTG
3' ss Score
5.95
Exon sequences
Seq C1 exon
AGACTAAAAGCCACATTGACCCACCAAGTTTCTTCAATCAATGGAGGTTGTGGAATGGTGGTAGGCACTGCAAGCACCATGGTGACAGCCCGTCCAGAGCAGAACCAGATCCTCATCCAGCACCCGGATGCCCCATCCCCTGCCCAGCCACAG
Seq A exon
GTCAGTTGTGCCCTTGGATGAGCACTCTAGGTGTGTCGCCCCAATTCTTTATGTTTTATCTGTTTTCAAGAATCATGAGATGAGAAAAGAATAAATTTAGCTTTCTGGGTAACCAGCTATTTTGATAGGTTGATTCATTCATTACTTACCTATCTTTGTGTTAGACATAAATGCAAACAGCTTGAGTTGTGCAGAGCTATTTCAGGAGAGACCTCTGTATCTCCTACTTATCTGTGAAGTCGTAACAAAAAAGTCATCCGATTAGATTTTATGGCATAAGAATAGATTAGGGGGGACTGGAGAGATGGCTCAGCAGTTCAGATCTGCATGAACTTCAGAGGGCCTGAGTTTAATTCACAGCAACCACATTGGTGACTCATAACCATCAATAATGTAATCTGATGCTTTCTTCTGGTACTCATACATTAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATCTTTACAAAGAAAAGAATATATTGATACTGAGACTAGAGAGAAAGCTCAGCAGTTAAGAGCACTGAATGTTCTTCCAAAGGACCTGGGTTCAATTCCCAGCATGGCAGCTCACTACGGTCTATAACTGTAGTCCCACAGGATTCCATAATGTCTTCTGATGTACAATATACATGTAGACAAAATATCCATATATATAAATAATCTTTTTAAAATATCTTAATACAATATATTGTTATAGTAATAAAATAGATGGTTCACTAAAAAGTAAGAAAACACATACACAAAAAGATCTTCTCATTACCAATCCACTAGTCCCTTTTCATCACAGAAATGAAAATTTTAAAAAAAATTTTCTTTAAGCTGGAGGAGGTCCCAGTTAGTTGCCCAATCTCTTCTCAACAAGGTCTCCATTTTAATATAATTCTTCAGGAACTGAATAGCTCCAGTTCTCATAATTGTCTCCACTGGACAGGTGACAGCAACCTGAGATTGGTTTCTAGAATTACATTCATTGCTTTGTCTCTGTTTTACTGATGTCACCACCTGCTTCATCAGCTACCACCACATGCCCAGACATTTCATGGCCATATGCTGCCTTAAACCTTGGCCAGCACCATGAGCTTTCATTTGTGTGTCTTCACAGAAGCTAGAGCGTCCCACCATTCTGAACCACTCACTCCGCAAAGCCAGCAGTTCTGCTCACAGTAAAGCACCAGCCTTTGCCTATCTGCATGTGGTACTGGGAGGATTGGGAAGAGGCGGAAGGCAGAGTAAGAAGCTAACAGACGTACATAGTGATAGGACCTGGTGTGATTCCAGATCTTTCCCAGATCTGACTAATCTACCTAACTCAGGTTTTCCCATCAAGTACTTCTCTGTTCTGCCAAACGACAAAGTTCAAAGTTTGTGCCTGCAAATCCCAGCACTCTGGATGCCTAAGCAGAAGGACCAAAAATCAGAGTCTGCTTGGACTATATAATAAAACTGTTCAAAGTCAAAAGAAAAAGGGAAAAAGTATTGTCTTAATTAGGGTTTTACAGCTGTGAACAGACACCATGACCAAGGCAAGTCTTATAAAGTACATTTAATTGGGCTGGCTTACAGGTACAGTCCATTATCATCAAGGTTCATAAGGGAGCAGGGCAGCATCCAGGCAGACATGGTGCAGGAGGAGCTGAGAGTTCTACATCTTCATCTGAAGGCTGCTAGTGGAAGACTGACTTCCAGGCAGCTAGGGTGAGGGTCTTAAAGCCCACGCCCACAGTGACACACCTGCTCCACACCTTCTAAAAGTGCCACTCCCTGGGCCAAGCATAGACAAGCCTCACACGTATTCTTCCTTCTGGGCAACAG
Seq C2 exon
GTGTCTCCAGCTCAGCCCACCCCTAGCACAGGGGGACGGCGTCGGCGCACAGTGGATGAAGATCCAGATGAGCGGCGGCAGCGATTTTTAGAGCGGAACAGAGCTGCAGCCTCCCGATGCCGCCAAAAGCGAAAGCTGTGGGTCTCCTCCCTGGAAAAGAAGGCAGAAGAACTTACTTCTCAGAACATTCAGCTGAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015269:ENSRNOT00000020527:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.941 A=NA C2=0.712
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0017016=bZIP_1=PU(70.3=68.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCCACATTGACCCACCAAG
R:
TCAGCTGAATGTTCTGAGAAGT
Band lengths:
342-2163
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]