DreINT0034730 @ danRer10
Intron Retention
Gene
ENSDARG00000057719 | atl2
Description
atlastin GTPase 2 [Source:ZFIN;Acc:ZDB-GENE-030131-6505]
Coordinates
chr13:7953914-7955188:-
Coord C1 exon
chr13:7955132-7955188
Coord A exon
chr13:7953986-7955131
Coord C2 exon
chr13:7953914-7953985
Length
1146 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGC
5' ss Score
9.37
3' ss Seq
GTTTGAACTCTATTACTCAGGCA
3' ss Score
3.95
Exon sequences
Seq C1 exon
GCATATATCAAAATCTACCAAGGGGAGGAGCTTCCACATCCTAAATCCATGTTGCAG
Seq A exon
GTATGCTGCTCTCCATCATGAAGTGTATATATAAATGCTTATAATTTATTACTATATAATAAAGATGGATTTTCAACAACCATCACTTAAGCCTTCAGTGTCAAATTAAATCTCAACTATTTAGTCTCCACTTCACTTCCTAATCTGCAATTGCCTCTCTGGATATCACACTAACTGTACCCAAAAAAAAAAAAAAAAGTACTAATACTTTCCTTCTTAGACTTTACAGACCTGAAACTTGCCTATAGCACTTATTCATTGTTGCTCTTATAGTTGTGTAAGTTGCTTCCTTGTCCTCATTTGTAAGTCGCTTTGGATAAAAGCGTCTGCTAAATGACTAAATGTAAATGTCAAATGATCCATCAGAGATTGTTTGATAATGTACTGATTTAGTGCTCAAGAAATGTTGAAAACAGTTGTTTAAGTGCTGTTTAATATACAGTTGAAGTCAGAATTATTAGCCCCCCGTTTATATTTTTCCCCAATTTCTGTTTTTCAACACAGTTCTGAACATAATAGTTTTCTAATAACTGATTTATTTTATCTTTGCCATGATGACAGCACATAATATTTGATTAGATATTTTTCAAGACACTTCTATAGAGCTAAAAGTGACATTTAAAGGCTTAACTTGGTTAATTAGGTTAACTAGGCAGGTTAGGGTAATTAGGCAATTTATTGTATAACGATGGTTTGTTCTGTAGACTATCGAAAAAGTATAGCTTAAAGTAGCTACTAATTTTGACCTTTAAAATGTTTTTAAAAAATATATAAATAATATGTTTTATTCTAGCCGAAATAAAACAAATAAAACTTTCTCTAGAAGAAAAAAATATTATCAGACATACTGTGAAAATTTCCTTGCTCTGTTAAACATCATTTGGAAAATATTTAAAAAAGAAAAAAAAGTCAAAAGGGGGCTAATAATTCCAACTTGAACTGTATATGTTAATGGTATGCATGTTTCTTTTAAAAATATTACTATTAGTAGTGATATTAAATATTATCTAATAATATTACTATAAATTCTTATGATAAATTCCAACTGTCTTTGTATAATTTTTATATGTTCTTATTGAAAATGCATTTATTTGAATAAATCTTGCTGTGTCGGTATGTTTGAACTGTTTGAACTCTATTACTCAG
Seq C2 exon
GCAACTGCTGAAGCGAACAATCTGACAGCTGTCGCTGGAGCAAAAGACACTTATAACAGAACCATGGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000057719:ENSDART00000080460:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.211 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF028419=GBP_C=FE(13.0=100)
A:
NA
C2:
PF028419=GBP_C=FE(16.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]