RnoINT0022644 @ rn6
Intron Retention
Gene
ENSRNOG00000006523 | Atl2
Description
atlastin GTPase 2 [Source:RGD Symbol;Acc:1305125]
Coordinates
chr6:2604640-2605598:+
Coord C1 exon
chr6:2604640-2604696
Coord A exon
chr6:2604697-2605526
Coord C2 exon
chr6:2605527-2605598
Length
830 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
TTTGTTTTACTTTCTTTTAGGCA
3' ss Score
10.67
Exon sequences
Seq C1 exon
GCATACATTAAAATATATCAAGGAGAGGAACTACCACATCCAAAATCTATGCTTCAG
Seq A exon
GTAAGAGTAAGACAGTGTGTTGGGGGGAGAATAAAATCATGGCTTTAGAGGAATATAGAAAATGGAGGGACATGCATTTTTTCACATTAATAAATTATATATGCTTAAGGTAACATTAAATGAATTCTGAAATAGATATGTAACTGCAAATGGTGACCCTGAGCAAGTATTGACTGCTAGGAGTATGAGCCTTGGTACTTTGTCTTCAGATCTAAAGTGTAACACAAGTGATTTTTGTATACGATGCTTTGATATAGGCCCCTCTGAACTAAATGCTTTTGTGAAATAAGGATTAGTTTCACTTGCTAGTAACGGGCTGCTTTGAGTGCAGTTAGACTTTGTCTGTGTTTATATTTTCTTTGGGAGCATTGTTATTTTTTATAAATTTTTATATTCTAAAATTTACCACTTTGGGTAATTCCTCAGTGTTAGAGTGGATTAATAGTAATTATATTAAAGCTTTGCAACAAAAGACAGTTTTGTGTGTTTGAAAACTTGTGTGTGAATCTGGTTGTTCACACAGGAGTTCTTAATTCCCAGGACTCAGCACATTTTGGGATTACATGTTTATCTCTGTCCATTTCCTGAGCGCATGGTGGTACATTGTCTGCAAATCAGTTTGGGCACAAATCCCAGTCAGACAGGGAGTCTGTTAAGCCTGTGCCATACTCTTAATACTGACACACCCTTCTGAAGGGAAGGGAAAGAAGAGAGTGATCATTTTTCTGCTCATTTCCATAAACTACTTGTTGTGTATAATGATGTTAATAGGAATTTATAGTCACGGGGCTTTTTTTCCCACAGTAATGGTTTGTTTTACTTTCTTTTAG
Seq C2 exon
GCAACAGCTGAGGCTAATAACCTGGCAGCAGTAGCGGGAGCAAGGGATGCCTACTGTAGAAGTATGGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006523:ENSRNOT00000008988:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.158 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF028419=GBP_C=FE(13.7=100)
A:
NA
C2:
PF028419=GBP_C=FE(17.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]