GgaINT0082226 @ galGal3
Intron Retention
Gene
ENSGALG00000008515 | ATL2
Description
NA
Coordinates
chr3:17391106-17392387:-
Coord C1 exon
chr3:17392331-17392387
Coord A exon
chr3:17391178-17392330
Coord C2 exon
chr3:17391106-17391177
Length
1153 bp
Sequences
Splice sites
5' ss Seq
CAGGTATTT
5' ss Score
7.51
3' ss Seq
TGGTTCTCAATGTTTTCCAGGCA
3' ss Score
7.7
Exon sequences
Seq C1 exon
GCTTACATTAAAATCTATCAAGGAGAGGAGCTACCTCATCCAAAGTCTATGCTGCAG
Seq A exon
GTATTTTGTTTTCTTTCAAATAAGATAGATGAGTGTTTCATAAGTGCTGGTCATGACCCTCGGGAATGTGAAGCTTCCACACACACATTTGTAGTTCTTGAAGGAACTGTGTTCTTTTGAAAGCAAATGAAGCAGGGGGCATTATTTTGTTTTTTAGCTGCTTCAATTTCAGGCATAAGTTTCCTTTAATAACTTGCTATTCTGTCAGTGTCTTTCAGACAGTATTCAGAGGGCTTTTAGTATCAGCTGTAGTAGACAAAATGGAGAAAGATTATAGTAGTGCAGCTAATACTACTGTCTCACAGTGTTGGGCTCCTAACAAACAAACATGTGCAACAAAGATCAGGTAACTACACTGAACTTTCCTTTGTGTTGATCTAAAGGGGGTGTAATCAGCTATAAAGTGACTTGAAGATGTAGTGATTGTATAAAGCTTATGTGATGAACATTTAGATTTTGTGATGAAGAGTTTTCTTCAAAGTACAGACTCTAGAGCCAGATAAATATTACACACATGAAATGGTTAAAATTAAGACATTAAGACATGAAGGATGAGTAAATACCAGAATAGTTGAGGAACCAATTTTTGAGACTTTGGGGGAGAGTTGGATGGTTGAGGAAACTTTCCATAATGAAACAAAGATGGTTACCATGTCCTCTAATTAACATGCTATAAATGTGGCTGAAAGGTAAAGATGACATCTTGCAGTATGAGCTAGAATAACTGTCCCTGATGTGACACAGTTTGAAAGTAGTATAAGTTCTTACAGATTGACACCAAAACTGCACATAGATAATACAGAAATAATACCAGCTTGCAGCTTTCCTCACAGGCAGTGATGTATCAGGATTAATGTTTAATAGTTTAGAGATCCTTATTTGCTTTTTAACAGTAGAACATTCAGAAGAGATTGCTCACAGTGACAAGCCTGTCCAAGTGCATGGGAGCTTGTCTATAGTTGTATTAGCTGAAAAAACCTCTCTCCGTGTCCATAACCTGTCTTAATGCGCATCACCAACCTTCACTTGTTTGTGCAGGGTGTTTTCTTGGCAGTCTTTGTTTGGTGTTGCTGGGGTATGTTGGATGGTGCAGATACATGTATATAACTGGCTGGTAGTGCTGTAGTGATATGTGGTTCTCAATGTTTTCCAG
Seq C2 exon
GCAACAGCTGAGGCAAACAATCTTGCTGCTGTGGCAGGAGCAAAAGACTTGTACAGTAAAGGCATGGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008515:ENSGALT00000013868:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.105 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF028419=GBP_C=FE(13.6=100)
A:
NA
C2:
PF028419=GBP_C=FE(17.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]