DreINT0035510 @ danRer10
Intron Retention
Gene
ENSDARG00000035565 | atp6v0a2b
Description
ATPase, H+ transporting, lysosomal V0 subunit a2b [Source:ZFIN;Acc:ZDB-GENE-060526-4]
Coordinates
chr5:24041185-24041686:+
Coord C1 exon
chr5:24041185-24041263
Coord A exon
chr5:24041264-24041588
Coord C2 exon
chr5:24041589-24041686
Length
325 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAAA
5' ss Score
3.28
3' ss Seq
TAAGTGTACTTGCATAACAGGAT
3' ss Score
5.11
Exon sequences
Seq C1 exon
CTCAATCCCAGTGTGAACTCTTTTCAGCGCAAGTTTGTCAATGAAATCAAGAGATGTGAAGAGATGGAGAGAATTCTGG
Seq A exon
GTAAAAGCTTTGCTCTTTAAATCTTTATCTAATAAGGGCATCATTTAGCTTGTGAAGGGTCTGAATAATTTCTGAACATAATAATTGTTCATAATTAAGTTATAACCAAAGAACAGTAGTAGTATAGAAAAATTAAGCAAAGTTGAAATATACATATCTATGAATGAAGTATTTGAAGTGGTAAACAATTACATTTTTTTTGTATAGTTAGAAATATTGAATTGAGTTTATTTATAAAATGATATGTGTTATGACATGAGGGAACTTTATCACAGACATTGATAGTAAATCAAAATCATGAACTCTAAGTGTACTTGCATAACAG
Seq C2 exon
GATATCTTCTGAGGGAAATTAAAAAAGAAGACATCCCACTGCCAGAAGGGGAGGTGAACCCTGCTGCACCATTACCCAAACATGTGATGGTCATAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000035565:ENSDART00000029699:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.182
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(3.2=100),PF104734=CENP-F_leu_zip=PU(9.2=33.3)
A:
NA
C2:
PF0149614=V_ATPase_I=FE(3.9=100),PF104734=CENP-F_leu_zip=FE(32.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]