RnoINT0023474 @ rn6
Intron Retention
Gene
ENSRNOG00000052704 | Atp6v0a2
Description
ATPase H+ transporting V0 subunit a2 [Source:RGD Symbol;Acc:621006]
Coordinates
chr12:37391571-37394352:-
Coord C1 exon
chr12:37394274-37394352
Coord A exon
chr12:37391669-37394273
Coord C2 exon
chr12:37391571-37391668
Length
2605 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
3' ss Seq
TCTGCATCTTCTTTTCACAGTGT
3' ss Score
8.61
Exon sequences
Seq C1 exon
CTCAACCAAAATGTAAGTTCTTTCCAAAGAAAATTCGTTGGTGAGGTAAAGAGGTGTGAAGAACTAGAACGAATATTGG
Seq A exon
GTAAGTTCGTCTTCTATTTTAGTCTAAATACTTTGTAATCTTAACATAAGCATAGCTGTTTCTTTCAGAAAACACAGATGAATAGGAGAGAGAGAGAAGCCAGGTAGTGGCGCACACCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGTGGATCTCTGAGTTTGAGGCCAGCCTGGTCTACAGCCCAAGTTTCAGGACAGCCAGAGCTACACAGAGAAACCCTGTGTGGGGGGCGGGGAGAAGAAAGAAGAAAGAGGGGTGGTGTGTCGGGGAGGGGGTGATCCCTGCTTCGGTTTTGATGGGAGCTGAGTAGAATTTCATGGTGTCCACGTGTCATGGCTAATTCGGACAATTTCATATAGTTTCTTTTATAAGTTAAGTGCCTTGCATACATGTTAATATTTGTCACTCAACTCAAGCTGTTATTTCGGAACAAGAAAGGCAGGAAATGGCTGACAGCCGGTTTGATAGCACTTGGTGTTTAGCAGGGCTTCCTTTGTGAGTGGCGTAGGTTGGTGCTTGCTTAACTAATACAGCCCAAACCCATGCCCAGGATTTCCTTCATCTCTAAAAGCTGTGGTATTAGTCAGGAGGCTGGGTTAGGTGTAATTTCTTTTTTTAAGATTTTTATTATTTATTTTATGTACATGCGTGCTCTAGCTGCATGTGCACCTGCATGCCAGAAGAGGTTGTGAGCCACCGTGTGGTTGCTGGGAATTGAACTCAGGACCTCTGGATGAGTAGAGCCGTCGAGCCATCCCGCCAGCCCCTTAGAATGATTTCTGATTGTTAATTGTTATTTTTTTTTAATTAGGAATTTTTTTTTTACTTTGAAATTGTGTACATGCACAGGGCATCTTGATCGTATTTGCCCCTCCCCCCCCCCCCCCCCCCCCCCCGTCTTCCTACACCTGCACATCCCCCAGTCCCTCCAAAACACTTCCCTCTCTCAACTTCCTGTCCTGTTTTCCTTTAACGACCTACCTAGTCCCCCTATGGCATCCATGTGCGTGGCCTTGGGGCTTCTACTAGGACACAGGCAGGTGACTGGTGGCCAGAGCTCCCAAAGAGGACGGACCCTGCCTGTGCTAGTTGCCCTCAGTTGCTAGTAACTCCTCATCGAGGAGCTCCCCTTAATTTAGAGATTTTTTTTTCTTTTCTTTCTTTCTTTCTTTTGAGGGAGGATGGACTGGGAATAGGATGGTCAAGGTCTCATGCAGCCCAGACTGGACTCAAGCACAATATGTACCTGAGGCGGACCTTAGACTACTGACCCTCCGCTTTTCTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTTCTTTTTTTCGGAGCTGGGGACCGAACCCAGGGCCTTGCGCTTCCTAGGTAAGCGCTCTACCACTGAGCTAAATCCCCAGCCCCCCGCTTTTCTTTCATATAGTGGACGATGTGACAGCCCGGAGCAGCAACACCCAGCCTTCTTCTTTTTTTTTTTTTTTAAGATTTATTTTTACTACTTTTAATTGTGTGTATCTGTCTGTCTGCCTGCCTGCCTGTCTGTCTATCTGTCTGTCTGTGTCCATGACACAGAGTGCCGATAAACCCTTGGAAAATAGAGGTGTGTCGTGTCTCCTGGAGCTAGAGTTACAGGCGGCTGTGAGCTGCCCAGTGCGGGAGCTGGGGATTGAACTTGGGTCTTCTGGAAGAGCACTCAGTGCTAAGTTCCAAGCCATTGCTCTAGATGAAACTTGAACTTTTAGTTAAGGATTTTAAATTAACAATAGTGTTTTGAACATGTTTATTACTTTTAATTGTACATCAGTGCGTGGCTGTGAACATATAAGTGTCATGCCCAGCGAAGCCAGAAGAGGCCATCAGATCTCCTGGAACTGTTGTCCACATGAGGTCCAGTTGTGAGCGGCCTCCTGTGGATACTGGGAACTGGACTGGGTCCTCTGAACCACCTCTCCAGCCCTAATATATATTTATCAGATTTTTTGTTTTGTTTTGTTTTGTTTTTCAAGACAGTGTTTCTCTGTGTAGCCCTGGCTGGCCTAGAACTCTTTGTGTAGACCAGGCTGGTCTTGAACTAAGAGATCCACTTGTCTCTGCCTCCCGAGTGTTGGGATCGAAGGCATGCGCCACTTTGCCTGGCTTCTAGCCCTAATGTTAACAATGACCTGTAGTCATGGGGAATCTCTTGCTTAAGGTGCTAGTTATTTGCATATTAATAGATCATGTGTTTGAGTGACATCATCACCTGTGGACAGATTGTGTGTGTAGAGTGAGGCTCCTCAAAGCAGAGCAAAGAGCTGCCTGGTGCCTTGCAGGGGAGTCTGGATCCACTGTGACTTTGACTCTGGGTTCCCTCTTGCAGGGAATGCTGGCCAGCTCACTGCCTCTGATGGGGGTACAGGTCTGCACCTTCAGTGTCTTCCCCTGTTTTAGCCTGGGTTTTAGTTATGTAAGAAGCTGGGTAGCTCTAACCAGTGCATGCAGGAGGTGACAGGGACAGGCGGGATCTGGGCACACAGCAGGTTGGGGCTACCAGGGTTCCGATCGCAAAGGGTCACAGGGAGCCTGTCTGACTCTGCATCTTCTTTTCACAG
Seq C2 exon
TGTACCTGGTGCAGGAAATCACCAGAGCTGATATTCCCCTGCCTGAGGGAGAGGCCAGTCCTCCCGCACCACCTGTTAAACATGTTCTAGAAATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052704:ENSRNOT00000083401:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.378
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(3.2=100)
A:
NA
C2:
PF0149614=V_ATPase_I=FE(3.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]