GgaINT0007378 @ galGal3
Intron Retention
Gene
ENSGALG00000003194 | ATP6V0A2
Description
NA
Coordinates
chr15:4968447-4969916:-
Coord C1 exon
chr15:4969838-4969916
Coord A exon
chr15:4968545-4969837
Coord C2 exon
chr15:4968447-4968544
Length
1293 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAGC
5' ss Score
7.43
3' ss Seq
TGTTTCTCTTCTCACTCCAGGTT
3' ss Score
10.97
Exon sequences
Seq C1 exon
CTCAACCCAAATGTAAGCGTGTTTCAAAGAAAATTTGTGAATGAAGTAAAGAAATGTGAAGAAATGGAAAGAATTCTTG
Seq A exon
GTGAGCTTTATTTTCCTACCTGCCCTTTCTCATCTGAGGCATTATTTAAGTTTACTTTGCCAGAGTGGAACTGCAGTGTTGATTTCAGCTGCAGCTTTTATGTTTGATTTTTCCCAGCGTTGTACTGTCTGAATTTTGCAGAATCTTATAAAATTCTTGTGTCCATTAAAAAGGTCTGTGTGCACTCACATGCACTGTGTCTTTACATCTTCAGAGCCAGAGATGGCTTATTTGATTCCTGTGCTGAATTGGGTCAGAACATACATCTTGAGTACATCTACAGCTGGAGACTGCACAGCCTGTGGGCAATTCCAGTGTTTTAGTGCTGTCTGTCTCTTAATTTTCTCAGCTGTAAGTTTTACTTACTGTACAACATGTATGTGTTAAATATTGCTGTTCTGTTTTTCTTATTTTTTATTGGTTAAGCTCAGAAGTGAAGAAGAGTTGCTGATTCGTTGCTGATGAACAGTTGAGACTGTTTCTGTGCTGAATGGTTCAAATACTGCTGGGAAAACAGAAGCTTTGCTCTGGATATTCCCTTGACTATAAGATAAATCCTTTTTTTGTTTGTCTGTTTGTTTGTCACATTACACAATTCAGCACTGTTCAACTTCCAAGCACTCTCCAGATCATTTCAGGCTATTAACAATTGCTTTCACATGGCAGTCAGTGCATAGAGGAAAGGCTGCAGAGCTTGACCAAGGTGCGCTTCCCTGCAGCATATCCTGAGGAAAGGTTACTGTTGAAGGATTCTTTTATTGGAAAGTCTTACTGGAAGCATGTGCTGGTCATGCCATGCATCCCAGCAGCTATCGTGGCAATCGCGCTGCCCAGCATGAGCTGCATGTGTTGTTGGGTTACTTAAGCCTCTTTGTTTGAACACTGTATATTCCAAACATGAGTTTTTGAGCAGAATGTCAGTTTTTTTGCAGATGGCATTAGGAAGCAGTACTCGCAACAACAAAGACATACTGTGAAATGTTAAAAGCTTCTTAAAAAATGCTGGTGGTAGGAAAGCTTCAGTCAGACATCTCTGAGGATGGGTTCCTTCTGCGAGCTTCCAAGGGAAGTCTTGTGTTCTAAGCACATCATCAGTGCCTTTCCTCTGCAGAGGGCTCACCCTTTCCTTGTGTTCTTTTTGAAGACTTTGTGTATGGTTGCAAAAATAAAGGAGTAAACTAGTTAAGGTCTGATGCTGCAGTGTGATTGGTACCCTCACAATGGCTGTGTAGTATTCTGGGAAGTGTATGTGATATGCTTATATTTCTGATTGTGTTTCTCTTCTCACTCCAG
Seq C2 exon
GTTATTTAGTACAAGAAATTAAAAAGGCGGATATTCCTCTTCCTGAGGGAGATGTTGCTCCTCCTGCCCCCTTGCTGAAACACATTTTAGAAATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003194:ENSGALT00000005063:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(3.2=100)
A:
NA
C2:
PF0149614=V_ATPase_I=FE(4.0=100),PF102244=DUF2205=PU(27.0=51.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]