DreINT0035670 @ danRer10
Intron Retention
Gene
ENSDARG00000063001 | atp8a1
Description
ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1 [Source:ZFIN;Acc:ZDB-GENE-060929-36]
Coordinates
chr14:46011294-46014354:+
Coord C1 exon
chr14:46011294-46011459
Coord A exon
chr14:46011460-46014310
Coord C2 exon
chr14:46014311-46014354
Length
2851 bp
Sequences
Splice sites
5' ss Seq
ACTGTAAGA
5' ss Score
4.8
3' ss Seq
GTTGTCATTTTTCTTAACAGCTC
3' ss Score
9.46
Exon sequences
Seq C1 exon
AACTCCACACGGCCTCCTCTGAAGCTTTCTAATGTGGAGCGCATCACCAATTTCCAAATCCTCGTTCTTTTCGGCTGTCTCTTGGCCATTTCGCTGGTTTGCTCCATCGGCCAAACCATCTGGAAGTACCAGTTCGGCAATGACGCCTGGTACATGGATCTCAACT
Seq A exon
GTAAGAGCCAGACCTCTCCTCCTCCTGTCATGCTAGACCGCTTGCGCGTCTATGTGTGCTTTCATTTTATTTTATTGTCAGTAATTTTCGTCCTCCCTCTGTGTAAACAAATATGCATTGCATATGTGAATATTTGTCAATAAAAAGGGAAAGGAGAACCTTTCTCTTTTAGTTCTAATATGCATAGACACAAGGGGTTAAACGGATCGCGGTTGGTCTGTGATCCATTCGGATTGCGACCCACGGATCGGAACGTTCATTATTTACACATTTTGAACACAAGTTTAACGATCACTGTGAAAGTTGGTTTTGCTGCTGTTTCTTTTTTTAAAATAGGCTTGCAGATTTTTATGTACTCTAACTATTTACTTTCCCTCCACTTGTTCAAAACGAGTTTTTTGAGTTTCTGGTAAACACAATAGGAATGGTTGAAAGTTTCTGATGGTATGATAACCTTGGATAAAAATATCACAGTTTCACAGTGTCATGGCATTTTCATTACTGCTGTAAAAAAAGTTATTTTAAAATGTCTGGGTTAAAAATATAAATAAAAAATTCTCCATTGAACACTTATTATATTTTAGAGTAGCAAACATGTCAGGCTAAATAATTTAAGTAAATATTTCTGCTCTCTTTGTTAGTTTTAAAACCACTGATTTATTTACATCACATAAAAAAAAACATCTTTTAAAAACCCTTACAAATACCATAGGAACGGTGACACAGAAAATCGTAGCAGTTTTAAGACCTTGTCTTTTCTAAACCGTAGTAAACCTTGAAACCGTTTATTGTCTCATGCCTAGAACATAAAACAAGATATGTTGAAGAATGTTGGAAAAAGGTTAGTCTTTTTTTCTACTATAGATGCCAGTGGTTACTGGTTTCCAGTAAAAGTTCTGGAAATTTTGTGTTCAACACAAAAGAAACTCAAATGCTGGAGGTACATTTTCAGTTTTTGGTGAACTCTTTCTGTAATCTGATGTTTTATTGTAAAAGGGTACACACACTGTATTATAAATTACTGCATGAAATCTTAAATTCAGTTCTCTTTAGTGACAATGTCTTAGAACATTCTTTATTATTTTTTAAATTCAGTTGTTAATAGGGTTGGGCGATGTCGACTAATTTGGCATCATACGATGTCTAATGTTAAACATCGCGATGGACTATGGCATCGTCGTCATATGTGGCGGTAAATTAGTTATTTATGAATAATTCATTAATTAATAATGAATTAATTATTTGTAGCCTACTGTTTCAATTACCTGACCCGCATGGTTTTTGTTTTACCCATAACCAAATCATAAATAAACAAAAATAAGTTACACACAAACTACCACCTGTCAATCACTTTTTCTGTAGGCATGAATAAGCAGAGTGATCTATGTTGTTATAATGGTGTCCACAAATTGATTGGTAAAAAGGTGCACAACTGACAAGTACAAGCGTACAAAAATCCTGTACAAGTGTGAAATCGAAAGATTGAAGCAGTGCAATGACGCTGTGACACGTCACCCGATAGCTTCAAAAGACAGAAGAGTTGTTAGGTAGAGACAAGATTAATTAAATATCACATTTGACAACTATAGTGAAATGCGATCCAGCGGTACATCCTTGATAAACTGCCTGACGTGTACTGCCCTCTGGAGTTTTGTGCTCCAAGCACCCAATGACTGCTGGAGCTCAGATGAGCACATACGCTGCTGCATGCATGACAGTGTGTTTGTGTGGTTGCGTGAGGTATAGTGTTGAAGGAGATCTTATTAGAAATGCTAGATGAAACGCCAGTGTGGACGTGTATCGTTTTTTTCTAAAATGCCATTTTAAAACTAAAACGTATTAGTGTAAACAGGGCCTGAACGTGTTTTTCGCGAGCGGGTTGCTGCTGTGACAGGGGCGGGGTAAAGGATTGCGATGCCGGCCCGGCATCGTGATGTCTATCGGCCATCGGCGATGGACAATGGCATTGTCTATCTACCCAACCCTATTTAGGTTAATCAGAGTATTTTAACAAAATAAAATCAATCAATAATTTATTTACTAATGATTTTTTTTACTTAAATGCTTTTGTATAATATTTATATTTGTATTTAAAATTGTAATTAGTAAATTTTTATTGTATTTGTTTGACTACTTTCAATAACAAAGATAAAGAAAATGTTGTGGTCATTGGTATATTTATGATTAAAAATTGAGTTTTTTTTTTTACATTTATATTTATAGACTTTAATGTTTCTTAAAAGTGTAGGTTCCATAGTTTTTCATGATAAAACCAGCTTTCTTGTAATAATTTGGAAAGCATTTTATTTTATCTTATTTTGCTTTATCGTGTTTGACTTTATATTTTATTTAATTTTACTTTTAATATTAAATTATTTAATTTATATTTATTTTATTTGTATTATTATATTTTGAATAAAATTAAATGTATTTAGTACTTTTAAAAATATATATATTATTATAATATGAGATAGTAGTTAGATGTGAATTAAAGATGGTCAAAGACAGGGGGTGGGGAGTAGTGAGGGCTTGGGAAAGCTGAGATTTGGACTCAGGACGACCGGCCCATGAGCCCATCAGTCGGACAGGAGAGCTAATTATATTCACCCCAACACCACTTTTTTTATAATTGAAAAATCGATCCGTGGCTCCAAAAACCGAAATGTGATCCGAACCGTGAGTTTTAGGATCCGTTTAACCACCAATAGACACACAAATGTATAAATGGTTGAATATCACAAACGCTGCTGTACTTTTTGTTTTTTCGTTCGTTTTGTTCTCAGCTTCCTTTCTAACATTCTGTTTGGTTTGTGTTTTTTTGTTTCTTTGTTGTTGTCATTTTTCTTAACAG
Seq C2 exon
CTCCAGGTAACAACCATTTAAAACCCTTGGCCATCTGTGAATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000063001:ENSDART00000091620:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.022 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0012215=E1-E2_ATPase=PD(23.1=94.6)
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]