MmuINT0021713 @ mm9
Intron Retention
Gene
ENSMUSG00000037685 | Atp8a1
Description
ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1 [Source:MGI Symbol;Acc:MGI:1330848]
Coordinates
chr5:68156103-68158424:-
Coord C1 exon
chr5:68158259-68158424
Coord A exon
chr5:68156231-68158258
Coord C2 exon
chr5:68156103-68156230
Length
2028 bp
Sequences
Splice sites
5' ss Seq
ACTGTGAGC
5' ss Score
4.2
3' ss Seq
CGCTTCCTCCTCCCCAACAGATG
3' ss Score
10.04
Exon sequences
Seq C1 exon
AATTCCACAAGCCCACCACTTAAACTCTCCAATGTGGAACGGATTACAAATGTACAAATTCTGATTTTATTTTGCATCTTAATTGCCATGTCTCTTGTGTGTTCTGTGGGCTCAGCCATTTGGAACCGAAGGCATTCCGGGAAAGACTGGTACCTCCATCTACACT
Seq A exon
GTGAGCAGCGAAGGCTGACTTGCTTGCTTTTCCCCTTTGTTGAGATAGACATTTGCCTCGCCATCGATCTTAGTTTAGTTTGCGAAATATCCCATTGTTTCTGAAAGGGAAACTTGTGGCTAAGAGAGCTGGAGGTCTTGCCTTTATTTTTTTAATAGACTTCCAGAAGACACAAGTAAAATTTAGGTCCTCAGAACTTCAGAATACCTAAAAACATGCCTCATTTCATAGTAGTATAAAATGTTCTAAAATATAACCATTAATGTGATATCCAAATAAGAACTGCCCTCTGTATTAAATGTGGCAGGTCAACTCATGAAAGGAGATTTTGTGTAGAGGAAAATGAGTATTGAATATATTATGAATATATATTACATGCTTTAAAATCCTTGGACTGTCTTTTTCTTTTTCCCCTTCTTCCCTCCCTCCCTCCCTTCCTCCCTCCCTCACTCCCTTATTCCCTCCCTCCCTCCCTCATTCCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTTCCTCCCTTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTCTTTCTTTTTTAATGGGCTCTCCTTTGAACTCACTAACAGAAGTCTTAAGTAAATGCTTGTCTTGTCCCAGGGAGAGTAGTTTCGGATCACTTCCGTTAGAACATGTGTTTATTCTCTTGCTGGTCTCATATTAATGTATCCCCTCTGGGAATTTCTAGGAAGTGAATTTCCATTTCCTTGGGATGAGTACTTAGCCAGTAAATATTTAATTTCCCCAAAGTGTAAAAACAATTCCAGTACAATCTTACAGAAACAAAACAAACAAACAAACAAAATACAGATTTCAAAAGCTGTTTTTATTGCATGTAACTTTTTATTACATTTATTTAGCTTTGCAGCTATTCCGGGGTTTTTATAGTCGTTGATTTATTATTACAGCATGAAAGGGTTATTACTGTGATCGATTTGTTTGTGTATATTCCTTACAGTATATTAGGTTTCCTTGTTTTATTTTTACTGAAGAGGAGGTTAATTTACTTAGGAGAAAAACTTACCTACAGACGAAAACTACTCCCGTAGCTAAGGATGGCTCAGTGTAGCATTTACCAGCTTATAAGCAAGGACTCCCAGGGCCCAGCACTGGAAAAATAAGAAGCATTCTTACAACTCAGACTGTTCTAGTTGCTGTTGTTTGCTTTGAAACCATACTTTAGTTTGAAAATGTGTTAAAGAATTTGCATACAAGTGGTTGTGCCTAATTTGCATTTACAAACTGTCATCCTTCCTAATGTCTCTCAACTTCCAGATTGGAACAGGGTTTGCATTACCAATAACAAAGGCACTCTCCCTACCCCCAAGACAAGGTTTCTCTATATCCCTGGTTATCCCGGAACTCCCTCCGAGGACCAGGCTGGCCTCAGTTGTACTCAGAGATCCACCTGCTTCTGCCTCCCTAGTTCTGGGATTGAAGGCGTGCACCACCACCATGGCAGCTTCTTTGCCTTTTTAGTAGCACCATGGAGATCTTGATAGGGTTAATGTGCTGTATCCACTGAAGCTTGTCTCTCAGACATCAGGAGCCGACCATGACCCAACAGACACCCAAGGCTTTTTATTTTAAATGACCCAGTATTTGTTCTATGTATATTTTGTCATATACTGTAAGTCATAGCCAGGTTACTTAGCATTCATGATGCAAAAAATATATTTGCTGTGTAAGTGGTTATTACACTATGTTAGGAAATAATAAGTCTACACATACTTAGTAGACAGAGTATTTTCAGTCTAGAGTTGGTTGGATCGCTGATGTGGGACCCTAGAGGAAGATATATGTCTGAATGGTACATTGAAGGGGATGGTGAGAATCAAGATTTCTTGTATGATATAGGAAATCCTTGTACTCAGATCTCACTACAGATATAGAGCTGTCAATGATGCGCTTCCTCCTCCCCAACAG
Seq C2 exon
ATGGTGGCGCTAGTAACTTTGGACTGAACTTCCTGACTTTCATTATCCTTTTCAACAACCTCATTCCCATCAGCTTGCTGGTCACATTAGAAGTGGTGAAGTTTACTCAGGCATACTTCATAAATTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000037685-Atp8a1:NM_009727:11
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0012215=E1-E2_ATPase=FE(20.2=100)
A:
NA
C2:
PF0012215=E1-E2_ATPase=PD(15.1=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: