GgaINT0067951 @ galGal4
Intron Retention
Gene
ENSGALG00000014236 | ATP8A1
Description
ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1 [Source:HGNC Symbol;Acc:HGNC:13531]
Coordinates
chr4:67787892-67789880:+
Coord C1 exon
chr4:67787892-67788057
Coord A exon
chr4:67788058-67789752
Coord C2 exon
chr4:67789753-67789880
Length
1695 bp
Sequences
Splice sites
5' ss Seq
ATTGTAAGC
5' ss Score
5.06
3' ss Seq
TTTGTTTTGTATTTTGGCAGATG
3' ss Score
8.81
Exon sequences
Seq C1 exon
AATTCAACAAGTCCACCTCTTAAAATGTCTAATGTGGAACGAATTACGAATATTCAGATTTTGATTCTTTTCTGCATCCTTATTGCCATGTCTTTGATCTGCTCTATTGGTTCAGCTGTATGGAATCGAAGGCATTCTGAAAGAGATTGGTATCTTGATCTAAATT
Seq A exon
GTAAGCTGTAAAGTAATGTATTACTAATTTACTGCTCACTTTATCCTGAAGCCTTACACTTTTGGAAAGGGGGATGATTACCATCCTTCAATCAGTCCTTCTTTACTGGTTGTTTACTGAAGTTGTTAGTCTAGGTATATCGCAGCTAGTGTAAGTTTTACCGTACTGTGCAATGTGAGTTGTTGCTATATTCAGAAAGGGAATTTTGTTATTGAAGCTTCTGCATCTCTGCAACTGAGTAAGGTTTGTACCAGCATTTTGGTGACATAGTGAACCTCACTGATACCAAGCTGAAGCAATTGTCAGTTATTGCTGATGAATTGCATGTAAACCTGCGGTTTCTTCCCCAAATTTTTAAACTCCCTTGTCTCAGGAAATGATACTGCTGCTTCATAGTTTTTATACTTTTCAAGAATCTAAGTAAACACTGCCTGTCAGTGTCAGATCCAAACAGGCTGCTCCTGAAATGAACAGGCACATTGATCTCCCCTCATCTAATATATGGACAGCTCTACTTTCAGTTGACGAAGGCAATGGAATGTTATGCAGGTCTTCCAGCAGGATGCAATGTACTGACAGAATTCAACTCTCAATGAGGGACCTAGATCTAAAGAAAGTCTTCATAAATATACTTTGTGATCTGCTAGTGATGTTTTCAGAACTTCTTACAGAGGGTCTAGAGCCTTCTTTACTTAGGTAGTCAAGATAGAACTAGATTTTCTTCTTCTGACACCATCAAGTCTTGAATACAAAGCTGCCCAATGTAGTAGTCAAATAAATAATTGTGAAAGTGTTTGGAAGATAGTGGTTAGCACAGTAGTGAAGTAGTTCTGAAGCTTTTATTTTTTTATTCCTGAAAATAAGAAAACTTGAAATAGTGGCCATTGAGATTTGGTGGGATTTTCAAGTGATCGTCCTTACCAGTCCACTTACTGCTACATTACATGATTAAATGGACTTCTACTGTTTCTTTAAGTTATGCCCTTTAGAATTGTTCTTGAACAAGGTACTGCTAATATGTAAGAGGCAATTTATTCCCCTTTACCTTTATTGAATTTTTCTCTTTATTTAATTGCATTCTCATTAGAGTTCCGTCTTTTCTGGGGAATGCTTTTGGAATTTTGTTAGCACAATTTTTATTTTTAACTAGCAATATGTATCAAACTTAATTTAATCTAGATTGCCATTAGTTAGAAAAACAGTGTTACCCCCCTGATCTTCCAAATTTGTACTTCATTTGATTCTGGAATTGGTATTTAACAAAAGTATCCAAAACCTGGATTTTACTGTAACAAGCAGGCACACGTGCTGTGTGCTGACCTTTGCTCCGTTTCTCTTTCCTTCTGTCTTAATATCAGGCTGTAGGCACTGCTAAAAACAGATAATGCATTTCCAAACACTAGTCATAAGTCTATATAGGCTAACACGAGTGTATTCTTAACATGGGCTAACACATTGACCTTGTTATTCATTGTTGTGGAATGTACTCTCAGAACTCTTAAATCGCTGATGGCTAATGTTATTTAAGAAACCTTTCTTGTTGCATACCATTTTTAAGGCAGTAATTTATAAATTCTTAGGTGTCTTTTAGGCAAAGAAATTACAAAATCAGCAATTAATGCTCTGAATACACTATATGCACTTGCTTTTAAATATGGTCTTAAATGTTTTCTGATTTGTTTTGTATTTTGGCAG
Seq C2 exon
ATGGTGGAGCAAGCAACTTCGGTTTAAACTTCTTGACTTTTATCATTCTCTTCAATAATCTAATTCCTATCAGTTTGTTGGTTACACTTGAAGTTGTTAAATTTATCCAAGCATATTTCATAAATTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014236:ENSGALT00000023022:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0012215=E1-E2_ATPase=FE(20.1=100)
A:
NA
C2:
PF0012215=E1-E2_ATPase=PD(15.1=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCAACAAGTCCACCTCTTAAAATGT
R:
AACAACTTCAAGTGTAACCAACA
Band lengths:
262-1957
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]