DreINT0036849 @ danRer10
Intron Retention
Gene
ENSDARG00000102974 | baz2a
Description
bromodomain adjacent to zinc finger domain, 2A [Source:ZFIN;Acc:ZDB-GENE-041010-202]
Coordinates
chr23:6746355-6746976:-
Coord C1 exon
chr23:6746830-6746976
Coord A exon
chr23:6746585-6746829
Coord C2 exon
chr23:6746355-6746584
Length
245 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATG
5' ss Score
8.99
3' ss Seq
ACAAATCCGGATGTTTTCAGAAA
3' ss Score
4.21
Exon sequences
Seq C1 exon
ACTTGTCAGGTGTGTCGTAAGGGTGATGATGATGAGTATCTGCTGTTGTGTGACGGCTGTGATCGTGGGTGTCACATGTTCTGCCTGAGGCCGAAGGTCCTCCAGGTGCCAGATGGCGATTGGTTCTGTCCCAACTGCGTTGCCAAG
Seq A exon
GTAATGTCGATAAACTAAAAATGTGCATCTGTTTTTGTTTGAGAAACTCTTAAGTCTTAAAATAGTTTGTATTTTAATAAAGTGTTCTATTGCATAACGTCTAATTCTCCAATTGTAGATTTTTATTGTTATTGTTTGAAGGTCACGAGTGGCTCTGTAAGCATTTCACCGTGTATTAATCTGTGCATGACTCAGTATGGTGACATCCAGTTTGAATTTGATGTAACAAATCCGGATGTTTTCAG
Seq C2 exon
AAAACGGGTGAATCTCCAAGATCTCAGCGCTCGTCACGCCAGAGGTCGAAGGTGCGCAAGCGGCGTCTGGGAGAGGACAGTTCGGATGAGGAGGAAGGCTTCAGACGGAGCATGACCACCCGACAGAAGGAGACTCCAGCTCCCTCCAGCAGCAGCAGCAGCACCAGCATCTCTCCCTCCAAACGCAGACGGATGACCACACGAAACCAGCCTGACCTCACATACTGCGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000102974:ENSDART00000157828:26
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.844
Domain overlap (PFAM):
C1:
PF0062824=PHD=WD(100=100.0)
A:
NA
C2:
PF0043920=Bromodomain=PU(1.2=1.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTGTGTGACGGCTGTGATC
R:
TCTGCGTTTGGAGGGAGAGAT
Band lengths:
293-538
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]