HsaINT0016808 @ hg19
Intron Retention
Gene
ENSG00000076108 | BAZ2A
Description
bromodomain adjacent to zinc finger domain, 2A [Source:HGNC Symbol;Acc:962]
Coordinates
chr12:56992913-56993632:-
Coord C1 exon
chr12:56993486-56993632
Coord A exon
chr12:56993143-56993485
Coord C2 exon
chr12:56992913-56993142
Length
343 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
CACCTGTTTCCTATACTAAGCAG
3' ss Score
1.72
Exon sequences
Seq C1 exon
ACATGTCTAGTCTGCCGGAAGGGTGACAATGATGAGTTTCTTCTGCTTTGTGATGGGTGTGACCGTGGCTGCCACATTTACTGCCATCGTCCCAAGATGGAGGCTGTCCCAGAAGGAGATTGGTTCTGTACTGTCTGTTTGGCTCAG
Seq A exon
GTAAGGCTTCTGCTCTTTCTTTCCCACACTCAAACAGAAATCAGAGATTATCCTCAATCTCTCCTCTCCTTGGAAAGAGTCCTAGACTGGGTATTAGGGGACCTGGGTTCTAAGTCCTTTTTTGGACAAGTCACTTAAATTCTATAGCTTTAATTGCTGTCTCTATAAAATGAGAATAACTATACCTTCCCTTTTACCTACTTCATTGGGTTATGTGAATAAACCAATGCCGGCTTATGCATGATAGTATTTTGAAGCCTTAAATCATATTTAGGCAGAGATTGTAGTAGGGCAAGCAGTGCATCTCCAGCTGTTGCTAATCTCACCTGTTTCCTATACTAAG
Seq C2 exon
CAGGTGGAGGGAGAATTCACTCAGAAGCCTGGTTTCCCAAAGCGTGGCCAGAAGCGGAAAAGTGGTTATTCGCTGAACTTCTCAGAGGGTGATGGCCGCCGACGCCGGGTACTGTTGAGGGGCCGAGAAAGCCCAGCAGCAGGGCCTCGGTACTCGGAAGAAGGGCTCTCCCCCTCCAAGCGGCGGCGACTCTCTATGCGGAACCACCACAGTGATCTCACATTTTGCGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000076108-BAZ2A:NM_013449:26
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.364
Domain overlap (PFAM):
C1:
PF0062824=PHD=WD(100=100.0)
A:
NA
C2:
PF0043920=Bromodomain=PU(1.2=1.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATGTCTAGTCTGCCGGAAG
R:
TGGTGGTTCCGCATAGAGAGT
Band lengths:
356-699
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)