GgaINT0050429 @ galGal3
Intron Retention
Gene
ENSGALG00000012579 | BAZ2B
Description
NA
Coordinates
chr7:38191578-38195230:-
Coord C1 exon
chr7:38195084-38195230
Coord A exon
chr7:38191838-38195083
Coord C2 exon
chr7:38191578-38191837
Length
3246 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATG
5' ss Score
8.99
3' ss Seq
TTATTCCTTTTTATTTTCAGGCA
3' ss Score
10.26
Exon sequences
Seq C1 exon
TACTGCCAAATATGTCGAAAGGGAGATAATGAGGAACTGCTGCTGCTTTGTGATGGTTGTGATAAAGGCTGTCATACCTACTGCCACAGACCCAAGATCACTACCATACCAGATGGTGACTGGTTTTGTCCTGCCTGCATAGCAAAG
Seq A exon
GTAATGCTAACCATAAAGTCAAAGTGACATGTAGTGCTCTTCTTGTAGATGCTGGAATTATGTCTGTCAGTGCTTTTTTTCAACAAAAATAATGATCTGTATGTTTTACGTTGGGTGGCAATTCGATTATATGAGATGAATTGTATCAGAAATAGTGTGGCCAGCAGGAACAGGGAAGTAATTATTCCCCTGTACTCAGCACAGTGGTGAGGCCGCACCTTGAGTACTGTGTCCAGTTTTGGGCCCCTCACTGTAAGAAAGACATCGAGGCCCTGGAATGTGTCCAGAGGAGGGCAACAAAGCTGGTGAGGGGTCTGGAGCACAGGCCTTATGAGGAGCGGCTGAAGGAGCTGAGGTTGTTCAGTCTAGAGAAGAGGAGGCTCAGGGGAGACCTTATTGCTCTCTATAACTACTTGAAGGGAGGTTGTAGTGAGCTGGGGGTCAGCCTCTTCTCTCGGGTGACTAGTGATAGGACTAGAGGGAATGGCTTCAAGCTGCGCCCGGGAAGATTCAGGCTGGATGTTAGGAAATACTACTTCTCTGAAAGGGTGGTCAGGCACTGGAATGGGCTGCCCAGAGAGGTGGTGGTGTTCACCGAGCCTGGTGGTGTTCAAAGAGCGTTTGGATGTTGTGCTGAGGGACATGGTTTAGCAAGAACCATTGGTGAAGGGCGGATGGTTGGACTGGATGATCCTGTGGGTCTTTTCCAACCTTGGTGATTCTATGATTCCATGAATTGTTTTATTTAACTTGGATTTCAGTGGCAGTAAAAGTTTGTCTTAAACTTTAATTTTTAATGTAAATATATCCATAATTTTTTGCTGATTCAGCATCATAACTTTTGTCTTTAGAGCCTCATTAAGAGTTTTTGTCTTAGATTGTTTGAAAAGAAAAATCAGAGAAAAATATGTAGTAAATCATTGTCTATTTTTTTACAGCATAAATTAGTTTTATTTTTTTGATACAGCACAACGTATTTCAGAGAGTCTTTAAGTATTTTTTTTCCTCAGATAAAAATAGTCTGAAGAGAACAATAGGATAGTTCTGTCTAAATGACTCAAAGCAGGAGATATTATTAAATGTCCACATTTTTTCTAGTCTGTTTGTAGTCCTAAAATTAATACAGTTTTTCATTTGTGAACACTAATTTTCAACTGCAGTACTCAGTGTTGTACATTTCTCGTATATTGTCAGTGTGATCCTTTTTAGGTGCATCTTTGACAAAGTGATGAGGAAAGTGCATTGTTTTTTACACAATGTGCAGCGCAAGTGATGAAAATAGGTCACTGTTGGGAATTCATTGTGTAGTAGAGGTAAATTCAGGCTTTAACCTTTTCCTGTAGCTATCCAGGAATCATATTACAACTTACCTTGTTATAAGGATAGAAATTATCCCATCGTGCTATAACTTACCCTGTTGCTTCTGGATTTATTTTTTTCTCCTGTTTTCCTTTAAAATAATTGCATCTCTAGTATGACAGAATAACATTTTCCTGAGGTGTTTCTTTTGTCGCAGATTTGGCTGAAAGTTAGAAATCTGAAGGTATAAGAAATCCAAAGTACAGTTCTACCTGAACTTCAGAGTATGTTGAACAGCGATTCAAAATTCTGTAAAACAGAGAAACAATTTTATGACAAGTTAAAAAATGTGCTGTCCTAATTAATCTCAACTTGGATTTGTGAGCATCGCTCTTTTTTTCCTTTACAAACTAATACACTTGGCTGTTTCTCTAACCTTGGACAAAGAATATAGATGTGATACCGAATGGCAGTCCATTAATGGACTACCATTAATGGAGTCCAGTTATTTCCAGAATATTCTCGTGTGTTCAATATTAAGCAAAACTAATTCTATACACAGCATTCCTTTTCCACATTACAAATCAGATGACAAATTGCAAACTGACCACGTTTCTTGTCACACTAGCTACAATCAGATCCAAAATGCTTAGGAAAGTCATTTATAAAATTCATGAAATTACTTAATTTCTAATCAAAAGTGTAAGTGGGTCTTTTCAATAGCTTTGTGTGTTTGACATTATGTGCTAATGATCTGAGTAATGTCCTCAAATACTGTCTTCGTATGATGCTGTCAATAACCATAACAACTCCTATTGTCTACATACTTAACGCATTCTTTATTAGTTTCACCTCATTATCTATAAATATTTTTCTATTTGATTAAATAATAATCCTTATTTCCAGGTTGTACCATTGTTGTGTTTTTGTACTCCTAAGTTTTATTGTATTTGTCTTGTGTTTAGGCTATTTATATCTTTCATATCTAGCTTTTATTTACATCAGTTGATCCCTTTGCTGTCTTGACTTTTAAAAGTTCTTTTCTGTATTTTGCAAATAGTACAGTTGCTTGAAAACAGATGTAGAATTCCAGTTGTGGTTATATCAGTCTTTTGAGAATGGACAAATAGAAGGGTTGCTCCAGCAATGATGCCTCCTAGTTTATGATTTTGTGCTATGACATCAGAGGTGGATGTTGGTGTTATGGTAGTAGGGGTTGACACTTCCTGCCAGTACTCCATTACACTTCATCACTGTGCAGTAGATGGCCGCAGGGGAGCTGTCTGACAAAATGGCGTCTGACATGGAAATGCATATGAAGCAAAGATGTGGAATTGAATTCCTCCATGCAGAAATAGTGGCACCCATTGACATTCATTGACACTTGCTGAATATTTGTGGAGACCAAGCAGTGGATCTTGGCACAGTGAGGCAGTGGGTGGTGGATTTCAGCAATGGCAACAGCAGTCACCTCGGCTGGTGCATATTTTTATGAGCATGGCGTGCAGGCTGTTGTTAATTGCTGGCAAAAATGCATATCAAATGGTAGTGACTATGCTGAAAAATGGCGTTGTGTAGCTGTGAATTTCCTCTATCAGATAGTGTTATTGTGCTCTTAGTAGTTGTTACAGTTTCCATGGAAATAAATAGGAGGCATCACTTTCAGGGTGACCTATGTACTGTACCTAAAACTAGGCCATCTTGGTTTGCTGGGAGGTATTGTCATACCTGCCTGAAGGTCAGGTGCTTTTACACTGTCATGAGTTGAGAACCTAAACCACTAGTCACAGGGATTTCTGCAGCCTTGCTCACCTTTACATAAGAGGAAAAAGTGACTAATTGCCGACATGTTACAGTTTTTTTTGGTGACTGATCTTCACTGCTATCTATCAGTAGTAACAGATCTCTGTAATTTCTTGGTTTTTGCTTATTCCTTTTTATTTTCAG
Seq C2 exon
GCAAGTGGTCAAACTCTAAAATTAAAAAAACTTCAAATAAAAGGAAAAAAAAGTAATGAACAAAAGAGAGGCAGGAAATTACCAGGAGATACAGAAGATGAAGACTCTGCGACTACTAGTACCTCATTAAAAAGAGGGAAAACAGAACCTAAGAAAAGGAAAATGGATGAAAGTGTTTCTGTAAGCCAAGGAAAACAAGAAAATTTCACTGCTATAAAGAAACCTAAAAGAGATGACTCCAAGGACCTGGCTATATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012579:ENSGALT00000037699:32
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.632
Domain overlap (PFAM):
C1:
PF0062824=PHD=WD(100=100.0)
A:
NA
C2:
PF0043920=Bromodomain=PU(1.2=1.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]