RnoINT0024839 @ rn6
Intron Retention
Gene
ENSRNOG00000056984 | Baz2b
Description
bromodomain adjacent to zinc finger domain, 2B [Source:RGD Symbol;Acc:1309801]
Coordinates
chr3:45971107-45973075:-
Coord C1 exon
chr3:45972929-45973075
Coord A exon
chr3:45971373-45972928
Coord C2 exon
chr3:45971107-45971372
Length
1556 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
TTTGTTTTTTTTAATTAAAGGCA
3' ss Score
5.79
Exon sequences
Seq C1 exon
TACTGCCAGATCTGTCGAAAGGGAGACAATGAGGAACTGCTGCTACTCTGTGACGGCTGTGACAAAGGCTGCCATACCTACTGCCACAGGCCCAAGATTACAACTATTCCTGACGGGGACTGGTTTTGTCCAGCTTGCATCGCTAAG
Seq A exon
GTAAGAATGGGAGGAAACTAATTTGTTTAAATTACCAGTTTTGTGGCTTGTTTTGTTTAAAGATATAAATCACATTTTATAAAATTCACCTTTAAAACAGTCTATTAATTTTTAATCCATTCAAAGTTGTATAATATCACCACTATTCAGTTCCAGAGCATTCTCTCAATACTGGAAGCCTTTTTACAGAAATACAATGTGTCTGCCTTCTTTTCCTAACCACAGTGCTTTGAAAGTTCATGTTCCGGCCTAGTTCAGCATGTTTTATAGTGGGAGAATACTGTGTCCTATGGATTTACTACTTTTTGCTCATTCATCCATCAGCTGATGAACATCTGAGTTGTTCCTACCTTCCAGATACGGCGAATGATTCTCTCTGTTCATGTCCAGTCTTTGTAACAGCTGTGTCTTGGATACATGGCCTGCAGGGGAATGTCTAGGTCAGGTGATAGTGAACACCTGTATATGTAGTCATTTTTAAGTCACATTTAAAATAGGAACCTGCAAATTGAGAGAAAGAGCAGTAAAAATATATATTTATATATAAATATGATAAATTAGGAAGAAATGGCTTGGGTGTGGTACACACATCTATAGTTCCAGTACTCTTGAGCCACTAACAGGAAGATAGATGTGGGGCCAGCCTGAGCTACACAAATAGACCCTGTCTCCATAGAGGAGGGATTAAGGCTTTAGCCAAGCTGTACAGTGTTTTGTTTCATTTTCAAGGCCCTGAGTTCAGTCCTTAGCACCACAATAAAGTCCAAGAGGAAGGAACAAAGTTAATTTCAGAACTAACTGGTAAGGAAGAGGAAGTGTGTGGAGAGGAGTCTGTAGAAGACCTGACTGGGGGCATTCGTTACATCTGACACTCTTCCAACTACATACGTGACCTAATGCTGGCCACCCCGACCTCCTGTGCACGAGTGCGGCTCTAAGCATGCATTTCCCTAGGTACTCCTTCCGTCACTCCAGTGCTGTTCTGTTCTACACAGGGCCTTGAATTATGGTCAGTGTCTCCCTCCCTCCCTTATGACTTAACAGGTCAGTCACCCATTATTAGATTGTGTCTCAGGTTTGGCCCTTTGCCTCTCAGTAAGTAAACCATGCTGGCCCTGGCAGATTCATGGCCCTGGTTATTTTCCTTAATTACTAAACAGAATAATAACTGTCATGTAAGATATAGACTATTTTATGCTACTTCAACATTTTCCTTAAAAAATACATTTTTTTTTCTCCCTGTCTCTTCCTGCGCTCTGAACTACAACTTGGAAAACTTTTCTCAACACAAATACATTTCATTCTTTATCTAGAAAATAATTTTTTGTAGATTTGATCACTTTAAAAATCAAGTTTATTTGGCACTTCATGCTCCCATTTGTCTGACTTTGTATCCCCTTAGCATTCCTGTTGATAACCTCCCTCTGTGGTTTTGTTTCCAGACATTTGTTCCTGCGAGTGCTGTGCTCTGAAAACATTTAAGATCTGAAGTGACAGAACATCTGTAAGCAGCTGTTTTCTATACCCCACTTACCTTTTGTTTTTTTTAATTAAAG
Seq C2 exon
GCAAGCGGTCAGAGTATAAAAATTAAAAAAATTCATATCAAAGGAAAAAAGACAAATGAATCCAAGAAAAGCAAGAAAGGAAACGTCGCTGGGGACACTGAAGACGAAGACTCCACTTCCACAAGCAGTTCACTCAAACGAGGAAGCAAAGATCTCAAAAAGAGGAAAATGGAGGAAAACACTTCCCTCCACTTGTCAAAAGCAGAAAGTGCTACTTCCGTTAAGAAACCGAAAAAAGAAGAGTGCAAGGACCTGGCTCTCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056984:ENSRNOT00000081302:31
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.629
Domain overlap (PFAM):
C1:
PF0062824=PHD=WD(100=100.0)
A:
NA
C2:
PF0043920=Bromodomain=PU(1.2=1.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGACAAAGGCTGCCATACC
R:
GCCAGGTCCTTGCACTCTTC
Band lengths:
347-1903
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]