BtaINT0025110 @ bosTau6
Intron Retention
Gene
ENSBTAG00000020654 | BAZ2B
Description
bromodomain adjacent to zinc finger domain, 2B [Source:HGNC Symbol;Acc:HGNC:963]
Coordinates
chr2:37143561-37146064:+
Coord C1 exon
chr2:37143561-37143592
Coord A exon
chr2:37143593-37145886
Coord C2 exon
chr2:37145887-37146064
Length
2294 bp
Sequences
Splice sites
5' ss Seq
TCAGGCAGG
5' ss Score
-14.57
3' ss Seq
CCTCATTTCCTTTTTTTTAAATT
3' ss Score
1.49
Exon sequences
Seq C1 exon
TCCCTAAAAAGCCAAATAACACAAAAGCATCA
Seq A exon
GGCAGGACTATAGCAAATAGGAAAGTCAAGTCGTGCCCCTATTTTTATGCAACAGTCATCACTCAACTCTGGCAAATTGTTATCATGTAGACATGTGGGCCCAGTGTTCCAGGATCGACTAGTATTTCAAGATTATGGATTTTATGCATATTCTTGCAAATGTTAAATATTGGCAACAAATTCAGAATTTATATAAGCATTATGAGCCAAACCACAACACATTCTGTGGGATGTTTATAGTCTGTGAACCACCAGTTCACAACTTCTGATATATAATTACACAAACATAACAGAAATGAGCCCTTCTATGTGTGTAATCTGATAGATTCTGCTTAAGACTTACTGAAGTTTCTCTTTGGATTTGGACTCCAATAAGATAGAAAGGGTGGGGAAGGTGGGGAGTCTGTGCAAGAACACAGACATCTGGTAATAGAGGCTCTGTATAAAAGCTGCTTGTAAAAGTATATGTGTGTGCGTAATCCAGTGAGATAAGCGTGATAAACATCATTTATCAAAGAAATAGAGAGGGTCCATTGTCTTTTTAAAACATCACGAGTCTTTTATTTCTGTGGATTTAAATTTCATGTTTTCTTACTATGAGTATTAATTTGTTAATATATGATCCCAAGTAATATTTTAGTTCACATAGGAACTAGAAATTATTCCTGAGCTTTTTCTCTTTTTAAGTAACACAGTTACTCAATCTAACTTAATCTTCATTAAACAGACCTTTTCCTCATGAATGAAGTTTTCTCGTTCTGTTTTTCTAGTGCTGAAAACTTTCAGGGCATAATATTAAAACTCAAAATAATCAGATTTTAGTGAATAAAAATTAATAAATTAAATGCAGAAGAGACTTAGTAAAACATTTTAATTTATTCCAGTTTCAAGAGGTAGTGATTCTTTGATACAGTATGGGGAAGGTGCTAGATTTATGGTTTGTCTTATTATTTTAGCCAATTAAAATACCTCTTTAATTATACTTTTACCTTACCAATAGAGAACCAAATACTTTTAATTGCTTGATTAAAAGCTATTTTTCAAAATAATGGTAGAAGAGGTCCTGAAATTCTCAAAGAAATTGATATGAAGTACTCCAGAAAAATGTTTTTCAGCCAAATTCATCCCAAGAATACAACTAGCTTTAAACTATCGGTAGATTGATATCTGACTCTTAAGTTTTAAGTCTACAATTTCTTAATTATCTGGTTAAGAGAGGCTATCGTTTTCTAAAAGAGGACAAACTATCCTGGAAAATTAAAACAAAAGCCATACATTACCAGTATCTTTGCACTGATATTCGTCAATGATCTATTATATTTATTGTAACAGTTAAGTCTGAAAATACAGATTTATTTCCCTATTTCTAAATTGAGGGGTAGGAAGGAGTTTAATCATTTTATCAGTGTGCTGCCTGCAAATTGTAGTTAGACTGCATAAGGTCATGTTGAGCTTTTTGGTTTTTTTTTTTTTTTCCATACAATTTTGGAGCTAGAATGACTTTACCAATTGTGTGGCATGTCTTTTTTATTTTACAAGTGAGATAATGGGGACTCACAGATATTTTTGTACAAAGTTCCATAGCTAGTAACTGACAGAGCCATAGCTACAATTCATGTTGTTTGATTCCAAATATAATCTCTTTTATACTATTTCTTCATTGTTTTCCTCAAATATCAACATTTTTTTTCTCTTCCTTCGCCTCTGCTTTGTTCACACCTGGTAACCACAACTTTGTAGAACTCTATCCTTGTAGAAAATGTCTTTTTTCTTTATCTATTAGTAGAAAGAAGTATCCATTTCCAGTATATTTGATTGCTTACAAAGGACTTCTCTGTTTAACACTTCATGAGCTATCTTCCTTGTTTTGGTCTAGCTTTTAAATTATCTCTTTAACTTGCTTATTAATAAGATCTGTATTTTTGTTTATATTCATCTTTGTTGTTAATTATATTGTGCTCAAAAAAGTAGTACTTTGTATCTTTAAAGTCATGCTGTTAGTGACCTAGACTAAGAAACAGTGCTGCTCTAAGTTCTGTAGTACCAAAGATTGCTTACCATGTGATCAACATCATCAGATTTTAAGAACTCCTCAAATAAATTGTTCATGCTTTATTAGAGTTTTTGCCTCATATTATAGGAGGAAAAAAAATTCATAGATCTCTGTTGAAATTATCAGCCTTCTAGATCAGAGATAATATTCTTTTTGTTTGCCCTGTCAGACTTTCATAACATAAAATAATAAAAGGCCTCTCGACAGTTATTTTTCTTACACCTCATTTCCTTTTTTTTAA
Seq C2 exon
ATTAAAGGCAAGTGGTCAAACCCTAAAAATCAAAAAACTTCATGTCAAAGGAAAAAAGAGCGAGTCAAAAAAAGGCAAGAAAGTGACTTTAACAGGGGATACTGAAGATGAAGACTCTGCATCAACGAGCAGTTCGCTGAAAAGAGGGGTCAAAGACCTGAAAAAAAGAAAAATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020654:ENSBTAT00000027534:41
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.567
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]