MmuINT0024163 @ mm10
Intron Retention
Gene
ENSMUSG00000026987 | Baz2b
Description
bromodomain adjacent to zinc finger domain, 2B [Source:MGI Symbol;Acc:MGI:2442782]
Coordinates
chr2:59901726-59903305:-
Coord C1 exon
chr2:59903159-59903305
Coord A exon
chr2:59901992-59903158
Coord C2 exon
chr2:59901726-59901991
Length
1167 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGA
5' ss Score
6.91
3' ss Seq
TTCTTTCTTTTTAATTAAAGGCA
3' ss Score
6.04
Exon sequences
Seq C1 exon
TACTGCCAGATCTGTCGGAAGGGCGACAATGAAGAGCTGCTTCTACTCTGCGACGGCTGTGACAAAGGCTGCCACACCTACTGCCACAGGCCCAAGATTACAACTATCCCCGATGGGGACTGGTTTTGCCCAGCTTGCATCTCTAAA
Seq A exon
GTAAGAATGTCGGGAAACTAAGTTGTTTAAAGTACCTGAGTTTTGTGGCTTGTTTTGTTTAAAGATAGAAATCACATTTTATAAAATTAATGCATTCACAAAGTTGTGCAGTATCACCGCTGTTCAATTCCAGAGCATTTTCTCAATATTGGAAGCCTTTTTACAGAAATACAGTGTGTCTGCCTTCTTTTCCTAACCACAATAGGTTGGAAGTTCATGTTCAAGCATAGTCCAGCACTTCTGTCTATAGTCGGAGAATACTCGGTTATATGGATCTACTGCATTTTGTTTATTCGTTCATCAGCTAGTGAACATCTGAGTTGTTTCTACCTTGCAGATACTGTGGATGATTCTCTTACTGGTCTTGTACTAGTCTCTCTAACAACTCTACCTTAGATGCCTGGCCTGTGGGAGAATGTCTAGGTCAGATTATAAAATGAACACCCGTATTTTTAGTCATTTTTCAGTCACATTTAAATAGAAACTTGTGAAGTAAATTAAGAGAGCAATAGAAATATATACTTATATGTAGATATAATAAATTAGGATGAAATGGGTTGGGTGTAACTAAAACCTCAGTGGCTAAAACCATGCTGGAAAGACCCGAGCAGATTCATGGCTCTTTTTTCCTCCCTGTCTTTTCCTGTGCTCTGAACCACTACTTGTAAAGCTCTTCTCGGTGCAAATACGTATCATTCTTTATCTAGAAAATAATTTTTTGTAGATTTAATCACTTTAAAAATAAAATGTATTTGGCGCTTCTCGAGCTCATTTTCCCTTCTGTCTACCTTCGTATCCCCTTCAGCATTCCTGTTGATAACCTCCATGGTTTTGTTTTCAGACACATTTGTTCCTATGTGCACTGTGCTCTGAAAGAGCCCTGTATACTCACTTGGTCAGCAGCCTAGACTGCAGGAGCACTGGCTGTAAGTTCTAACTGCCAAAGGTGCAGCTGCATCTCCAATCTTTTTAAGATAGCTTTTTCTCATGCTTTACCGGGCGTGACTCGTCTATTACAGGAGAGATTCCCAGACCTCTGTAAGAGAATTACCAATCTTCTAGGGTTTCTTGTTGATCCTATTAAACATTTAAGATCTGAAGTGATAGAGCATCTGTAAGCAGCCGCTTTCTTATACACCCTATTTACTTCTTTCTTTTTAATTAAAG
Seq C2 exon
GCAAGCGGCCAGAGTATAAAAATTAAAAAAATTCATGTCAAAGGAAAAAAGACAAATGATTCCAAGAAAACCAAGAAAGGAAACGTCGCCGGGGACACAGAGGATGAAGACTCGGCTTCCACAAGCAGCTCCCTCAAGAGAGGAAGCAAAGAGCTCAAAAAGAGGAAAATGGAGGAAACCACTTCCCTCAACCTGTCAAAAGCAGAAAGCACCACCTCCATTAAGAAACCCAAAAAAGATGAGTCCAGGGACCTGGCTCTCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026987:ENSMUST00000112550:32
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.003 A=NA C2=0.674
Domain overlap (PFAM):
C1:
PF0062824=PHD=WD(100=100.0)
A:
NA
C2:
PF0043920=Bromodomain=PU(1.2=1.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGGCGACAATGAAGAGCTG
R:
GGAGGTGGTGCTTTCTGCTTT
Band lengths:
348-1515
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types